View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_13 (Length: 463)
Name: NF6365_low_13
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 449
Target Start/End: Original strand, 13457256 - 13457688
Alignment:
| Q |
11 |
caaaggaaaactctcatgtctagtgcaatatggtactaggaggataagaaaattgcagttgatttgtaagtttatatcacttgccatggacaatttaaag |
110 |
Q |
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| T |
13457256 |
caaaggaaaactctcatgtctagtgcaata-----ctaggaggataagaaaattacagttgatttgtaagtttatatcacttgccatggacaatttaaaa |
13457350 |
T |
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| Q |
111 |
caacaaaataatcaaaaggcatgccatcccgtttaaggaaacagtataaaaagatagaacaaaataaattcactataaatgaaaattgttcaaaacggat |
210 |
Q |
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| T |
13457351 |
caacaaaataatcaaaag-catgccatcccgtttaaggaaacagtataaaaagatagaacaaaataaattcactataaatgaaaattgttcaaaacggat |
13457449 |
T |
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| Q |
211 |
tattttttatttatctaccaaaagttaatttgaatattgaatccatgtatagattgaacagcagtaatctaatcaggcatttatccttataattcagatt |
310 |
Q |
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| T |
13457450 |
tattttttatttatctaccaaaagttaatttgaatattgaatccatgtatagattgaacagcagtaatctaatcaggcatttatccttataattcagatt |
13457549 |
T |
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| Q |
311 |
caaatccaatattccaaaatccttccggagtcaaaggaggaacatacttataacgatgcctagaaacaccatcatgatgctcacaacgactattttgctt |
410 |
Q |
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| T |
13457550 |
caaatccaatattccaaaatccttccggagtcaaaggaggaacatacttataacgatgcctagaaacaccatcatgatgctcacaacgactattttgctt |
13457649 |
T |
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| Q |
411 |
attgctatcggggtccttaccatcagcattaggaagaac |
449 |
Q |
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| T |
13457650 |
attgctatcggggtccttaccatcagcattaggaagaac |
13457688 |
T |
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