View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_14 (Length: 448)
Name: NF6365_low_14
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 54688262 - 54688678
Alignment:
| Q |
20 |
gtaataagttaatcaaagccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688262 |
gtaataagttaatcaaagccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagat |
54688361 |
T |
|
| Q |
120 |
tgactttctcactaccttcctggatatcaagaacttcttaacttctgaagtgagttcgacttcaccgcttcctcttcttttgcttcttcttatgagggat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688362 |
tgactttctcactaccttcctggatatcaagaacttcttaacttctgaagtgagttcgacttcaccgcttcctcttcttttgcttcttcttatgagggat |
54688461 |
T |
|
| Q |
220 |
tgaagttcccttgtgcattcttttgtgtgaattaaagcatctttagctgcactacacacatctaatagccttaaggaacaatccaaaaggttatttaccc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
54688462 |
tgaagttcccttgtgcattcttttgtgtgaattaaagcatctttagctgcactacacacatctaatagccttaaggaaccatccaaaaggttatttaccc |
54688561 |
T |
|
| Q |
320 |
cattttcttggtgctcatgcagaagtgcatcttgtgttagtggaagctgaaccaatttttcaacacactcgatcaagttttgcaagccatcaattttatg |
419 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54688562 |
cattttcttgatgctcatgtagaagtgcatcttgtgttagtggaagctgaaccaatttttcaacacactcgatcaagttttgcaagccatcaattttatg |
54688661 |
T |
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| Q |
420 |
gaaaatcaatgatgatg |
436 |
Q |
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| T |
54688662 |
gaaaatcaatgatgatg |
54688678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 54700207 - 54700593
Alignment:
| Q |
20 |
gtaataagttaatcaaagccactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagat |
119 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||| |
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| T |
54700207 |
gtaataagctaatcaaagccactgtttgatggtcattgtttgtagataagatgttgctatgtttggtatttcccttcaaatttgccaaggctttggagat |
54700306 |
T |
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| Q |
120 |
tgactttctcactaccttcctggatatcaagaacttcttaacttctgaagtgagttcgacttcaccgcttcctcttcttttgcttcttcttatgagggat |
219 |
Q |
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| |||| |||||||||| || ||| ||| ||| |||||| | |||| |||||| || | | || | | || ||||||||||||| |||| |
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| T |
54700307 |
ggcctttttcactacctttcttgatgtcatgaatttcttagcctctgcagtgagctccaatccatctc--cc----------cttcttcttatgatggat |
54700394 |
T |
|
| Q |
220 |
tgaagttcccttgtgcattcttttgtgtgaattaaagcatctttagctgcactacacacatctaatagccttaaggaacaatccaaaaggttatttaccc |
319 |
Q |
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|||||||||||||| ||||||||||| || | |||||||||||| ||||| |||||||||||||||||||||||||| | |||||| ||||||||||||| |
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| T |
54700395 |
tgaagttcccttgtacattcttttgtatgcagtaaagcatctttggctgcgctacacacatctaatagccttaaggatccatccaagaggttatttaccc |
54700494 |
T |
|
| Q |
320 |
cattttcttggtgctcatgcagaagtgcatcttgtgttagtggaagctgaaccaatttttcaacacactcgatcaagttttgcaagccatcaattttat |
418 |
Q |
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||||||||| |||||||| |||||||||||||| || ||||||||||||| |||||||||||||||||| ||||| | | ||||||| ||||||||| |
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| T |
54700495 |
aattttcttgatgctcatggagaagtgcatcttgagtgagtggaagctgaatcaatttttcaacacactcaatcaaatctcgcaagcctccaattttat |
54700593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 202 - 420
Target Start/End: Original strand, 54693016 - 54693242
Alignment:
| Q |
202 |
cttcttcttatgagggattgaagttcccttgtgcattcttttgtgtgaattaaagcatct----ttagctgcactacacacatctaatagccttaaggaa |
297 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| || |||| ||| |
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| T |
54693016 |
cttcttcttatgatggactgaagttcccttgtgcattcttttgtgtgaagtaaagcatctttaattagctgcactgcacacatctaagagtcttagggat |
54693115 |
T |
|
| Q |
298 |
caatccaaaaggttatttaccccattttcttggtgctcatgcagaag----tgcatcttgtgttagtggaagctgaaccaatttttcaacacactcgatc |
393 |
Q |
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| ||| || | || |||||||| || ||||| |||||||| | ||| ||||||| | || |||| |||||||| || |||||||||||||||| | |
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| T |
54693116 |
ccatcaaacaagtcatttacccatttctcttgatgctcatggacaagggcatgcatctcgagtgagtgaaagctgaattaaattttcaacacactcgacc |
54693215 |
T |
|
| Q |
394 |
aagttttgcaagccatcaattttatgg |
420 |
Q |
| |
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|| | | ||||||| |||| |||||| |
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| T |
54693216 |
aaatctcgcaagcctccaatcttatgg |
54693242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 54692873 - 54692971
Alignment:
| Q |
39 |
cactgtttgatggtctttgtttgtagataagatgttgctatttttggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
137 |
Q |
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||||| ||||||||||||||||||||| |||||||| || ||||| | | |||||||||||| ||||| |||||| || | |||| |||||||||| |
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| T |
54692873 |
cactgattgatggtctttgtttgtagacaagatgttataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
54692971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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