View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_15 (Length: 445)
Name: NF6365_low_15
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 38802530 - 38802951
Alignment:
| Q |
19 |
agtagatatactgaatctattgtaat----gaatgttattgagttgattagcatatatgaattctcctaagattttaaacaagtattatactgaaaagtt |
114 |
Q |
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| T |
38802530 |
agtagatatactgaatctattgtaattaatgaatgttattgagttgattagcatatatgaattctcctaagattttaaacaagtattatactgaaaagtt |
38802629 |
T |
|
| Q |
115 |
ctattcatatatatacttaataacgactactaggttgtttcttgggtgaaaagtcatatacctacctcttggctgaaatcnnnnnnncatatacctcttg |
214 |
Q |
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| T |
38802630 |
ctattcatatatatacttaataacgactactaggttgtttcttgggtgaaaagtcatatacctacctcttgggtgaaatctttttttcatatacctcttg |
38802729 |
T |
|
| Q |
215 |
ggtgaaaactaggttgtttctacttaatgaatcgactatgatttattaaatttgaaaaggtaaataaaatcaatcaaagtgttttaaataactgaaaata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38802730 |
ggtgaaaactaggttgtttctacttaatgaatcgactatgatttattaaatttgaaaaggtaaataaaatcaatcaaagtgttttaaataactgaaaata |
38802829 |
T |
|
| Q |
315 |
aagtagataattaactatcaaccctttttgaatttttagaagaaattaccaacatgagaaaaacaaataggaatcgaatcctttcattgtccccgttttt |
414 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38802830 |
aagtagataattaactattaaccctttttgaatttttagaagaaattacctacatgagaaaaacaaataggaatcgaatcctttcattgtccccgttttt |
38802929 |
T |
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| Q |
415 |
tgacacacttgttctcctatgc |
436 |
Q |
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|||| ||||||||||||||||| |
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| T |
38802930 |
tgacgcacttgttctcctatgc |
38802951 |
T |
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