View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_16 (Length: 440)
Name: NF6365_low_16
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 424
Target Start/End: Original strand, 40560024 - 40560444
Alignment:
| Q |
13 |
gtaacaacccaatattcgagtcataaatgaaaagaaatatctatatttaatgtccaacatgactcaaataagactgtattcgatagaaaaaatctatgat |
112 |
Q |
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| T |
40560024 |
gtaacaacccaatattcaagtcataaatgaaaagaagtatctatatttaatgtccaacatggcttaaataagattgtattcgatagagaaaatctatgat |
40560123 |
T |
|
| Q |
113 |
atnnnnnnnngaggatgctagcatgcgcctaagagcatttgttaaataactcaatgtagtaatattgtcttaaaaatgatgcattcaatgtttttaaagt |
212 |
Q |
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|| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
40560124 |
ataaaaaaaagatgatgctagcatgtgcctaagagcatttgttaaataactcaatgtagtaatattgtcttaaaaatcgtgcattcaatatttttaaagt |
40560223 |
T |
|
| Q |
213 |
nnnnnnn-taaagtttatatcaatatgaaattgctcggtttagaatctttaacatgtccggtcaagacacaagttaacnnnnnnnnnnnn--------ca |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40560224 |
aaaaaaaataaagtttatatcaatatgaaattgctcggtttagaatctttaacatgtccggtcaagacacaagttaacaaaaaaaaaagtactagtaaca |
40560323 |
T |
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| Q |
304 |
tgattaaaattagctaacaaggaacctatcattggattaaacctaggacacatacaaccaatcactccgtgatggaaatataagcgtgaacagtaaaatg |
403 |
Q |
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|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40560324 |
tgattaaatttagccaacaaggaacctattattggattaaacctaggacacatacaaccaatcactccgtgatggaaatataagtgtgaacagtaaaatg |
40560423 |
T |
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| Q |
404 |
tctcacatttttataacataa |
424 |
Q |
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||||||||||||||||||||| |
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| T |
40560424 |
tctcacatttttataacataa |
40560444 |
T |
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