View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6365_low_21 (Length: 392)

Name: NF6365_low_21
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6365_low_21
NF6365_low_21
[»] chr2 (5 HSPs)
chr2 (18-286)||(36322607-36322865)
chr2 (281-382)||(36322970-36323071)
chr2 (114-163)||(9436127-9436176)
chr2 (105-217)||(45266494-45266606)
chr2 (128-173)||(25635589-25635634)
[»] chr1 (5 HSPs)
chr1 (132-217)||(5276945-5277030)
chr1 (124-199)||(44167553-44167628)
chr1 (130-192)||(43049434-43049496)
chr1 (148-183)||(28698435-28698470)
chr1 (131-189)||(13697232-13697290)
[»] chr5 (7 HSPs)
chr5 (115-190)||(42910459-42910534)
chr5 (128-196)||(5173781-5173849)
chr5 (125-172)||(40516774-40516821)
chr5 (130-217)||(17890718-17890805)
chr5 (130-172)||(8888107-8888149)
chr5 (131-183)||(2424571-2424623)
chr5 (126-174)||(15580399-15580447)
[»] chr7 (4 HSPs)
chr7 (105-178)||(39887626-39887699)
chr7 (132-183)||(33630877-33630928)
chr7 (126-191)||(17164567-17164632)
chr7 (131-177)||(34268689-34268735)
[»] chr4 (5 HSPs)
chr4 (106-197)||(32028215-32028306)
chr4 (123-172)||(30746107-30746156)
chr4 (126-177)||(2260426-2260477)
chr4 (110-191)||(4795112-4795193)
chr4 (141-177)||(3477116-3477152)
[»] scaffold0045 (1 HSPs)
scaffold0045 (128-178)||(55983-56033)
[»] chr3 (5 HSPs)
chr3 (146-220)||(810749-810823)
chr3 (134-215)||(4030186-4030267)
chr3 (128-191)||(14222656-14222719)
chr3 (126-220)||(46644376-46644469)
chr3 (133-217)||(11669439-11669523)
[»] scaffold0020 (1 HSPs)
scaffold0020 (126-164)||(172529-172567)
[»] chr8 (3 HSPs)
chr8 (127-217)||(33325485-33325575)
chr8 (126-154)||(1915519-1915547)
chr8 (126-198)||(33325617-33325689)
[»] chr6 (2 HSPs)
chr6 (134-220)||(30808437-30808523)
chr6 (130-191)||(33944783-33944844)
[»] scaffold0392 (1 HSPs)
scaffold0392 (127-174)||(2051-2099)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 36322607 - 36322865
Alignment:
Q  18 acataaacagtcttatacacttaacttatagtcacatacaaggcacaagaatgtagatacaagtaaaagggtcttagcctatgttgtgtatgtcataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  36322607 acataaacagtcttatacacttaacttatagtcacatacaaggtacaagaatgtagatacaagcaaaatggtcttagcttatgttgtgtatgtcagaatc 36322706  T
Q  118 acgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||| |||||||||||||||    
T  36322707 acgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacg----------gtgattcagacatacctcttgtgataccaaaca 36322796  T
Q  218 cactcttagttaccaacactgcaaatacaacatatataaatttccaaaagttacaacatcttcaaattt 286  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  36322797 cactcttagttaccaacactgcaaataaaacatatataaattcccaaaagttaaaacatcttcaaattt 36322865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 281 - 382
Target Start/End: Original strand, 36322970 - 36323071
Alignment:
Q  281 aaatttatgtctttttcgtgcatgctgaaattatgttgcatatgaacctagaacatccaactccttatctctcaactcaaaccagtttaaatgttagtat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36322970 aaatttatgtctttttcgtgcatgctgaaattatgttgcatatgaaccaagaacatccaactccttatctctcaactcaaaccagtttaaatgttagtat 36323069  T
Q  381 ta 382  Q
    ||    
T  36323070 ta 36323071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 9436176 - 9436127
Alignment:
Q  114 aatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttct 163  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||| ||||    
T  9436176 aatcacggcgacccactatgatttttcaaaaactacactttgtagtttct 9436127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 45266606 - 45266494
Alignment:
Q  105 gtatgtcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctatt 204  Q
    |||||||| ||||| | ||| |||  ||||||||   ||||||||| |||| |||||||||||||| |||| || ||| ||| ||||  ||||||  |||    
T  45266606 gtatgtcagaatcatggcgatccattgtgattttcataaaactacattttgcagcttctacaaaattacggcggatcaacgtaattctaacatactcatt 45266507  T
Q  205 gtgataccaaaca 217  Q
    |||||||||||||    
T  45266506 gtgataccaaaca 45266494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 25635589 - 25635634
Alignment:
Q  128 accgtgatttttcaaaaactacactttgtagcttctacaaaatcac 173  Q
    |||||||||||  ||||||||||||||||||||||| |||| ||||    
T  25635589 accgtgattttctaaaaactacactttgtagcttctgcaaagtcac 25635634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 5277030 - 5276945
Alignment:
Q  132 tgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 217  Q
    |||||||||||||| |||||||||||| ||||||||||||| | ||| |||||||||||| |||||| | | ||||||||||||||    
T  5277030 tgatttttcaaaaaatacactttgtagtttctacaaaatcatgatggatcaccgtgattctgacatatccactgtgataccaaaca 5276945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 44167553 - 44167628
Alignment:
Q  124 acccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatac 199  Q
    |||||||||||||||||||||||||||   ||||||||||||||||| | | ||| |||||||||||| |||||||    
T  44167553 acccaccgtgatttttcaaaaactacataatgtagcttctacaaaattatgatggatcaccgtgattctgacatac 44167628  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 43049434 - 43049496
Alignment:
Q  130 cgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattca 192  Q
    |||||||||| |||| |||||||||||||||||| |||||||| |||||||| ||||||||||    
T  43049434 cgtgattttttaaaagctacactttgtagcttctgcaaaatcatggtgggtcgccgtgattca 43049496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 148 - 183
Target Start/End: Original strand, 28698435 - 28698470
Alignment:
Q  148 acactttgtagcttctacaaaatcacggtgggtcac 183  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28698435 acactttgtagcttctacaaaatcatggtgggtcac 28698470  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 13697232 - 13697290
Alignment:
Q  131 gtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgat 189  Q
    |||||||||||||| ||||||| |||||||||  |||||||||  ||||||| ||||||    
T  13697232 gtgatttttcaaaagctacactgtgtagcttcagcaaaatcacattgggtcatcgtgat 13697290  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 42910534 - 42910459
Alignment:
Q  115 atcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgatt 190  Q
    |||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||||  ||| |||||||||||    
T  42910534 atcacgacgatccaccgtgatttttcaaaagctgcactttgtagcttctacaaaatcacaatggatcaccgtgatt 42910459  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 196
Target Start/End: Complemental strand, 5173849 - 5173781
Alignment:
Q  128 accgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagaca 196  Q
    |||||||||||| |||| ||||| ||||||||||||  ||||||||||| | |||||||||||| ||||    
T  5173849 accgtgatttttaaaaatctacattttgtagcttctgtaaaatcacggtagatcaccgtgattctgaca 5173781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 40516774 - 40516821
Alignment:
Q  125 cccaccgtgatttttcaaaaactacactttgtagcttctacaaaatca 172  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  40516774 cccaccatgatttttcaaaagctacactttgtagcttctataaaatca 40516821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 17890805 - 17890718
Alignment:
Q  130 cgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 217  Q
    |||||||||| ||||  |||||||| ||| || |  |||||||| |||| |||||||||||| |||||||| |  |||||||||||||    
T  17890805 cgtgattttttaaaagttacactttatagtttatgtaaaatcacagtggatcaccgtgattctgacatacccacggtgataccaaaca 17890718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 8888107 - 8888149
Alignment:
Q  130 cgtgatttttcaaaaactacactttgtagcttctacaaaatca 172  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||    
T  8888107 cgtgatttttcaaaaactacactttatagtttctaccaaatca 8888149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 2424623 - 2424571
Alignment:
Q  131 gtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcac 183  Q
    |||||||||||||  ||||||||| ||| ||||||||||| ||||||| ||||    
T  2424623 gtgatttttcaaatgctacactttatagtttctacaaaattacggtggatcac 2424571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 15580399 - 15580447
Alignment:
Q  126 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacg 174  Q
    ||||||| ||||||||||| ||||||||| || ||| ||||||||||||    
T  15580399 ccaccgtaatttttcaaaagctacactttataccttatacaaaatcacg 15580447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 39887626 - 39887699
Alignment:
Q  105 gtatgtcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgg 178  Q
    |||||||| ||||| | ||||||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||    
T  39887626 gtatgtcagaatcatggcgacccaccgtgattttccaaaagctacactttgtagcttctgcaaaatcacagtgg 39887699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 33630877 - 33630928
Alignment:
Q  132 tgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcac 183  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||||||||    
T  33630877 tgatttttcaaaaactatattttgtagcttatacaaaatcacggtgggtcac 33630928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 17164567 - 17164632
Alignment:
Q  126 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 191  Q
    ||||| |||||||  |||| ||||||||| || ||| |||||||||||||||||||| ||||||||    
T  17164567 ccaccatgattttataaaagctacactttataacttttacaaaatcacggtgggtcatcgtgattc 17164632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 34268735 - 34268689
Alignment:
Q  131 gtgatttttcaaaaactacactttgtagcttctacaaaatcacggtg 177  Q
    |||||||| ||||||||| |||||||||||||| |||||||| ||||    
T  34268735 gtgattttccaaaaactaaactttgtagcttctgcaaaatcatggtg 34268689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 32028215 - 32028306
Alignment:
Q  106 tatgtcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacat 197  Q
    ||||||| |||||||  || ||||  ||||||||||||| ||||||||| |||||| | |||||||||||||  |||| |||||||||||||    
T  32028215 tatgtcagaatcacgatgatccactatgatttttcaaaagctacactttatagcttatgcaaaatcacggtgaatcactgtgattcagacat 32028306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 30746156 - 30746107
Alignment:
Q  123 gacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatca 172  Q
    |||||||| ||||||||||||||| ||||||||||| |||| ||||||||    
T  30746156 gacccaccatgatttttcaaaaacaacactttgtaggttctgcaaaatca 30746107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 2260477 - 2260426
Alignment:
Q  126 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtg 177  Q
    |||| ||||||||||| |||||||| |||||| |||||||||||| ||||||    
T  2260477 ccactgtgatttttcagaaactacaatttgtaccttctacaaaattacggtg 2260426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 4795193 - 4795112
Alignment:
Q  110 tcataatcacgtcgacccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 191  Q
    ||||||| ||| | |||| |||||||||| || ||||||||   |||||||| || ||||| ||||||| ||||||||||||    
T  4795193 tcataattacgacaacccgccgtgattttgcataaactacaaagtgtagcttttataaaattacggtggatcaccgtgattc 4795112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 3477152 - 3477116
Alignment:
Q  141 aaaaactacactttgtagcttctacaaaatcacggtg 177  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  3477152 aaaaactacactttgtagcttcaacaaaatcatggtg 3477116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 56033 - 55983
Alignment:
Q  128 accgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgg 178  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  56033 accgtgattttgcaaaaaccacactttgtagcttcaacaaaatcacggtgg 55983  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 810823 - 810749
Alignment:
Q  146 ctacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacac 220  Q
    ||||||||||||||||||| ||||||| ||||| ||||| |||||| |||||| |||  ||||||| ||| ||||    
T  810823 ctacactttgtagcttctataaaatcatggtggatcaccatgattctgacataactaccgtgatactaaatacac 810749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 4030267 - 4030186
Alignment:
Q  134 atttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaa 215  Q
    ||||||||||| |||||||||||||||||| |||||||| ||   | || | |||||| |||||||||| ||| ||||||||    
T  4030267 atttttcaaaagctacactttgtagcttctgcaaaatcatgggacgacatcatgattctgacatacctactgtaataccaaa 4030186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 14222656 - 14222719
Alignment:
Q  128 accgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 191  Q
    |||||||||||| |||||||||||||| |||||||   ||||||| ||||| ||||| ||||||    
T  14222656 accgtgatttttgaaaaactacactttatagcttcagtaaaatcatggtggatcaccatgattc 14222719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 46644376 - 46644469
Alignment:
Q  126 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacac 220  Q
    ||||||| ||||||  |||| | ||||||||| |||||  ||||||||||| |||||||||||||| || ||| ||| ||| ||||||| |||||    
T  46644376 ccaccgtaatttttttaaaattgcactttgtaacttctgtaaaatcacggt-ggtcaccgtgattctgagatagctactgtaataccaatcacac 46644469  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 11669523 - 11669439
Alignment:
Q  133 gatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 217  Q
    |||||||||||| |||||||| ||||||||  |||||||| ||||| ||| ||||| || | || ||| || |||||| ||||||    
T  11669523 gatttttcaaaagctacacttcgtagcttcagcaaaatcatggtggatcatcgtgactctggcacacccatcgtgatatcaaaca 11669439  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 172529 - 172567
Alignment:
Q  126 ccaccgtgatttttcaaaaactacactttgtagcttcta 164  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  172529 ccaccatgatttttcaaaagctacactttgtagcttcta 172567  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 33325485 - 33325575
Alignment:
Q  127 caccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaaca 217  Q
    ||||||||| |||||||||||| ||||| || ||||| |||||| ||  | | ||||||||||||| ||||| |||   ||||||||||||    
T  33325485 caccgtgatatttcaaaaactatactttttaacttctgcaaaattacaatagatcaccgtgattcaaacatatctaccatgataccaaaca 33325575  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 154
Target Start/End: Original strand, 1915519 - 1915547
Alignment:
Q  126 ccaccgtgatttttcaaaaactacacttt 154  Q
    |||||||||||||||||||||||||||||    
T  1915519 ccaccgtgatttttcaaaaactacacttt 1915547  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 33325617 - 33325689
Alignment:
Q  126 ccaccgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacata 198  Q
    ||||||| || |||||||||||| ||||| || ||||| |||||| ||| ||| |||| |||||||| |||||    
T  33325617 ccaccgtaatatttcaaaaactatactttttaacttctgcaaaattacgatggatcactgtgattcaaacata 33325689  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 220
Target Start/End: Complemental strand, 30808523 - 30808437
Alignment:
Q  134 atttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattcagacatacctattgtgataccaaacacac 220  Q
    |||||||||||  |||| |||||||||| | |||||||||| ||| |||||||||||| || ||| | |   |||||||||||||||    
T  30808523 atttttcaaaagttacattttgtagctttttcaaaatcacgatggatcaccgtgattctgatatatccaccatgataccaaacacac 30808437  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 33944844 - 33944783
Alignment:
Q  130 cgtgatttttcaaaaactacactttgtagcttctacaaaatcacggtgggtcaccgtgattc 191  Q
    ||||||| || |||| ||| |||||| ||||||| |||||||||| ||| ||||||||||||    
T  33944844 cgtgattctttaaaagctaaactttgcagcttctgcaaaatcacgatggatcaccgtgattc 33944783  T

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Target: scaffold0392 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 2099 - 2051
Alignment:
Q  127 caccgtgattttt-caaaaactacactttgtagcttctacaaaatcacg 174  Q
    ||||||||||||  ||||| ||||||||||||||||| |||||||||||    
T  2099 caccgtgattttcgcaaaagctacactttgtagcttcaacaaaatcacg 2051  T

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