View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_22 (Length: 373)
Name: NF6365_low_22
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_22 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 7774482 - 7774140
Alignment:
| Q |
18 |
cagttgaatattttattgatgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774482 |
cagttgaatattttattgatgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtgg |
7774383 |
T |
|
| Q |
118 |
caccaaaattagtaccataattcctttcactgaattgcaaagttctgtatacaagccatttattcgtgattttctcaagaaggcttcggatagaaaaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774382 |
caccaaaattagtaccataattcctttcactgaattgcaaagttctgtatacaagccatttattcgtgattttctcaagaaggcttcggatagaaaaata |
7774283 |
T |
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| Q |
218 |
aagaaagtggaatcagtggcaccatttgaggcatgttttgactcatctagcattaaaaattctgtaccaagagttgatcttatgcttcaaggtggagtgc |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7774282 |
aagagagtggaatcagtggcaccatttgaggcatgttttgactcttctagcattaaaaattctgtaccaagagttgatcttgtgcttcaaggtggagtgc |
7774183 |
T |
|
| Q |
318 |
aatggactattcatgaagcaaatttgatggttaatgtgaagaa |
360 |
Q |
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| T |
7774182 |
aatggactattcatgaagcaaatttgatggttaatgtgaagaa |
7774140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 7767152 - 7766813
Alignment:
| Q |
21 |
ttgaatattttattgatgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcac |
120 |
Q |
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| T |
7767152 |
ttgaatatttcattgatgtgaaagctgttaagattgatggcaatgttttgaacataaagccttctttgttgtctattgacaaaaagggaaacggtggcac |
7767053 |
T |
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| Q |
121 |
caaaattagtaccataattcctttcactgaattgcaaagttctgtatacaagccatttattcgtgattttctcaagaaggcttcggatagaaaaataaag |
220 |
Q |
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| T |
7767052 |
caaaattagtacaattagtcctttcactgaattgcaaacttctgtgtacaagccctttattcgtgattttctcaaaaaggcttcagatagaaaactaaag |
7766953 |
T |
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| Q |
221 |
aaagtggaatcagtggcaccatttgaggcatgttttgactcatctagcattaaaaattctgtaccaagagttgatcttatgcttcaaggtggagtgcaat |
320 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
7766952 |
agagtggaatcagtggcaccatttgaggcatgttttgactcttctagcattaaaaattctgtaccaagagttgatcttgtgcttcaaggtggagtgcagt |
7766853 |
T |
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| Q |
321 |
ggactattcatgaagcaaatttgatggttaatgtgaagaa |
360 |
Q |
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| T |
7766852 |
ggactattcatgaagccaatttgatggttaatgtaaagaa |
7766813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 334
Target Start/End: Original strand, 26135656 - 26135822
Alignment:
| Q |
167 |
tacaagccatttattcgtgattttctcaagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgttttgactcatcta |
266 |
Q |
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||||| || |||||||| || ||| ||||||| |||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26135656 |
tacaaaccttttattcgcgactttttcaagaacgcttcgaatagaaaactcaagaa-gtggaatcagtggcaccatttgaggcatgttttgactcaacta |
26135754 |
T |
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| Q |
267 |
gcattaaaaattctgtaccaagagttgatcttatgcttcaaggtggagtgcaatggactattcatgaa |
334 |
Q |
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| T |
26135755 |
gcattgaaaattctgcaccaagaattgatcttttgcttcaagaaggtatgcagtggactattcatgaa |
26135822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 258
Target Start/End: Original strand, 7733674 - 7733843
Alignment:
| Q |
89 |
ttgtctattgacaaaaagggaaatggtggcaccaaaattagtaccat-aattcctttcactgaattgcaaagttctgtatacaagccatttattcgtgat |
187 |
Q |
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||||| |||||||| |||||||||||||| || ||| |||| || || || ||||| ||||| ||||| ||||| ||| ||| ||| || || | ||| |
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| T |
7733674 |
ttgtccattgacaataagggaaatggtggaacaaaacttagcacaatgaagtcctt-cactgtgttgcatagttccatattcaaaccacttgttagagat |
7733772 |
T |
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| Q |
188 |
tttctcaagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgttttga |
258 |
Q |
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||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
7733773 |
tttactaagaaggcttctgataaaaaaataaagaaagtggcatcagtggcaccatttgatacatgttttga |
7733843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 7699437 - 7699510
Alignment:
| Q |
185 |
gattttctcaagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgttttga |
258 |
Q |
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|||||| | ||||||||||| |||| ||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
7699437 |
gattttgtgaagaaggcttctgataaaaaaataaagaaagtggcattagtggcaccatttggagcatgttttga |
7699510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 7726357 - 7726421
Alignment:
| Q |
194 |
aagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgttttga |
258 |
Q |
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||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
7726357 |
aagaaggcttctgataaaaaaataaagaaagtgtcatcagtggcaccatttgatacatgttttga |
7726421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 7746123 - 7746059
Alignment:
| Q |
194 |
aagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgttttga |
258 |
Q |
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||||||||||| |||| |||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
7746123 |
aagaaggcttctgataataaaataaagaaagtggcatcagtggcaccatttgaaacatgttttga |
7746059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 7711469 - 7711533
Alignment:
| Q |
194 |
aagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgttttga |
258 |
Q |
| |
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|||||||| || |||| |||||| ||||||||| |||||||||||||||||| |||||||||| |
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| T |
7711469 |
aagaaggcctctgataaaaaaattaagaaagtgtcatcagtggcaccatttgaaacatgttttga |
7711533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 54 - 360
Target Start/End: Original strand, 11635 - 11941
Alignment:
| Q |
54 |
ttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcaccaaaattagtaccataattcctttcactgaatt |
153 |
Q |
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||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |||| |
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| T |
11635 |
ttgatggtaatgttttgaacttaaagccttctttgttttctattgacaaaaagggaaatggtggcaccaaaattagtaccttgagtcctttcactaaatt |
11734 |
T |
|
| Q |
154 |
gcaaagttctgtatacaagccatttattcgtgattttctcaagaaggcttcggatagaaaaataaagaaagtggaatcagtggcaccatttgaggcatgt |
253 |
Q |
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||||| |||||| ||||| || |||||||| |||||||||||||||||||||||||||||| | |||| ||||||||| |||||||| ||||| |||||| |
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| T |
11735 |
gcaaaattctgtctacaaaccctttattcgcgattttctcaagaaggcttcggatagaaaactgaagagagtggaatcggtggcaccgtttgacgcatgt |
11834 |
T |
|
| Q |
254 |
tttgactcatctagcattaaaaattctgtaccaagagttgatcttatgcttcaaggtggagtgcaatggactattcatgaagcaaatttgatggttaatg |
353 |
Q |
| |
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|||||||| |||||||| ||||||||| ||||||| |||||||| |||||||||| || ||||| |||||||| |||||| | ||||| |||||||||| |
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| T |
11835 |
tttgactcgactagcattgaaaattctgcaccaagaattgatcttttgcttcaaggaggtgtgcagtggactatacatgaaaccaatttaatggttaatg |
11934 |
T |
|
| Q |
354 |
tgaagaa |
360 |
Q |
| |
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| ||||| |
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| T |
11935 |
taaagaa |
11941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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