View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6365_low_26 (Length: 363)
Name: NF6365_low_26
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 38085799 - 38086146
Alignment:
| Q |
1 |
acaaaatccaatgcctatgtacaaatgtaagtattcaacgaaaattaaatccagtgagtaaaatagaaaatgatgaaaaacatatcgtggaatgactaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38085799 |
acaaaatccaatgcctatgtacaaatgtaagtattcaacgaaaattaaatccagtgagtaaaatagaaaatgatgaaaaacatatagtggaatgactaca |
38085898 |
T |
|
| Q |
101 |
cattttcaaaaattttgtcaaaaaaatagagcaagttctcnnnnnnnnnnnttaccttgaaaacattttcatcataagaaccaggagagatttgaagagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085899 |
cattttcaaaaattttgtcaaaaaaatagagcaagttct-aaaaaaaaaaattaccttgaaaacattttcatcataagaaccaggagagatttgaagagc |
38085997 |
T |
|
| Q |
201 |
tttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38085998 |
tttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatgga |
38086097 |
T |
|
| Q |
301 |
tcagatgccatggttgttaaccaataggaattgaatccattcacatagt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38086098 |
tcagatgccatggttgttaaccaataggaattgaatccattcacatagt |
38086146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 152 - 349
Target Start/End: Original strand, 38111769 - 38111966
Alignment:
| Q |
152 |
ttaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatg |
251 |
Q |
| |
|
||||| |||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38111769 |
ttaccctgaagacattttcatcgtacttgccaggagagatctgaagagctttataacctccatcgttgcaagcccatgttcttcctacatttaaaccatg |
38111868 |
T |
|
| Q |
252 |
ttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagt |
349 |
Q |
| |
|
| ||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
38111869 |
tcgagaagcttgttggaaatttgaagtgaccttagaacttgtagatgggtcagatgccatgatcattaaccaataggaattgaatccattcacatagt |
38111966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 152 - 343
Target Start/End: Original strand, 38156064 - 38156255
Alignment:
| Q |
152 |
ttaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatg |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||| |||| || ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
38156064 |
ttaccttgaagacattttcatcataagaaccaggagaaatttgaagaggtttagaatctccatcgttgaaagcccatgttcttcccacatttaaaccatg |
38156163 |
T |
|
| Q |
252 |
ttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattca |
343 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || | ||||| ||||||||||||||||||| |
|
|
| T |
38156164 |
ttgagaagcttgttgaaaattggacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattca |
38156255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 152 - 349
Target Start/End: Original strand, 38142750 - 38142947
Alignment:
| Q |
152 |
ttaccttgaaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatg |
251 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||||| ||||||| ||||||| ||||||| ||||||||| |||||||||| |||||||||||||| |
|
|
| T |
38142750 |
ttaccttgaagacattttcatcgtacttgccaggagagatctgaagaggtttataatctccatcgttgaaagccaatgttcttcccacatttaaaccatg |
38142849 |
T |
|
| Q |
252 |
ttgagaagcttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagt |
349 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||||||||||| ||||||||||| || | ||||| ||||||||||||||||||||||||| |
|
|
| T |
38142850 |
ttgagaagcttgttgaaaattggacgtgaccttgacccttgtagatgggtcagatgccattgtcatcaaccagtaggaattgaatccattcacatagt |
38142947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 160 - 349
Target Start/End: Original strand, 38091537 - 38091726
Alignment:
| Q |
160 |
aaaacattttcatcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaag |
259 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38091537 |
aaaacagtttcatcataaaaaccaggagaaatttgaagggctttatagcctccatcattgaaagcccatgttcttcctacatttaaaccatgttgtgaag |
38091636 |
T |
|
| Q |
260 |
cttgttgaaaagtggaagtgaccttagaacttgtagatggatcagatgccatggttgttaaccaataggaattgaatccattcacatagt |
349 |
Q |
| |
|
|||||||||| | || || || || | ||||||||| | |||| |||||| | | ||||| | ||||||||||||||||||||||| |
|
|
| T |
38091637 |
cttgttgaaatgcagatgtaactttgggtcttgtagataggtcagctgccataatcatcaaccagtgggaattgaatccattcacatagt |
38091726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 45891805 - 45891705
Alignment:
| Q |
172 |
tcataagaaccaggagagatttgaagagctttataacctccatcattgaaagcccatgttcttcctacatttaaaccatgttgagaagcttgttgaaaag |
271 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||| | | |||||||||| ||| ||||||| |||||||| |
|
|
| T |
45891805 |
tcataggaaccaggtgaaatttgaagagctttataacctccatcattgaaggcccatgttcttgccaagtttaaaccattttgggaagcttcttgaaaag |
45891706 |
T |
|
| Q |
272 |
t |
272 |
Q |
| |
|
| |
|
|
| T |
45891705 |
t |
45891705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 52433432 - 52433379
Alignment:
| Q |
181 |
ccaggagagatttgaagagctttataacctccatcattgaaagcccatgttctt |
234 |
Q |
| |
|
||||||||| |||||| | ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
52433432 |
ccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttctt |
52433379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University