View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_28 (Length: 356)
Name: NF6365_low_28
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 1702011 - 1702342
Alignment:
| Q |
17 |
agttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacact |
116 |
Q |
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| T |
1702011 |
agttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcactatatcagcccaccgtacact |
1702110 |
T |
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| Q |
117 |
cccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgtt |
216 |
Q |
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| T |
1702111 |
cccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgtt |
1702210 |
T |
|
| Q |
217 |
atgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaacaaatgtcctaatgaaattctgtttggttccactcctaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1702211 |
atgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaatgtcctcatgaaattctgtttggttccactcctaatta |
1702310 |
T |
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| Q |
317 |
tcttaatcttggagtctttggatatctgtgct |
348 |
Q |
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| T |
1702311 |
tcttaatcttcgagtctttggatgtctgtgct |
1702342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 5400760 - 5400962
Alignment:
| Q |
30 |
tacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattg |
129 |
Q |
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| T |
5400760 |
tacactgatggtggaactgaatactttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattg |
5400859 |
T |
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| Q |
130 |
gtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaat |
229 |
Q |
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| T |
5400860 |
gcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaat |
5400959 |
T |
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| Q |
230 |
ggc |
232 |
Q |
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||| |
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| T |
5400960 |
ggc |
5400962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 3541735 - 3541937
Alignment:
| Q |
30 |
tacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattg |
129 |
Q |
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| T |
3541735 |
tacactgatggtggaactgaatactttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattg |
3541834 |
T |
|
| Q |
130 |
gtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaat |
229 |
Q |
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| ||||| ||||||||||| || |||||||||||||| | ||||| || | ||||||||| ||| || |||| ||||||||||||||| || ||||| |
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| T |
3541835 |
gcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaat |
3541934 |
T |
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| Q |
230 |
ggc |
232 |
Q |
| |
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||| |
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| T |
3541935 |
ggc |
3541937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 26592339 - 26592278
Alignment:
| Q |
105 |
ccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaac |
166 |
Q |
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||||| |||||||| ||||||||||| |||||||||||||||||| | |||||||| ||||| |
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| T |
26592339 |
ccaccttacactcctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaac |
26592278 |
T |
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