View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_29 (Length: 328)
Name: NF6365_low_29
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 485770 - 485438
Alignment:
| Q |
1 |
aaagttagaattcaggatttgatgttggctatttgaattgaattcaggccatgttagttttaagcgtgaacataggtctcaacaaaatcaaaactttctt |
100 |
Q |
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| T |
485770 |
aaagttagaattcaggatttgatgttggctatttgaattgaattcaggtcatgttagttttaagcgtaaacataggtctcaacaaaatcaaaactttctt |
485671 |
T |
|
| Q |
101 |
gtttggtgattttattttggccagtttcatgcttcaatgaaagtcattcaagaatagtacacagcttacttcataatgcgac----taagtatatattag |
196 |
Q |
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| T |
485670 |
gtttggtgattttattttggccagtttcatgcttcaatgaaagtcattcaagaatagtacacagcttacttcataatgcgactaattaagtatatattag |
485571 |
T |
|
| Q |
197 |
tatattaat----------gatgatgtt-nnnnnnntactaaattaagacttcacaaaactggtaaagtggtatatattaattctttagtatataattgc |
285 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
485570 |
tatattaatgatgatcatagatgatgttaaaaaaaatactaaattaagacttcacaaaactggtaaagtggtatatattaattctttagtatataattgc |
485471 |
T |
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| Q |
286 |
atttgcatgttacaatattctagccggcctttg |
318 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
485470 |
atttgcatgttacaatattctagccggcctttg |
485438 |
T |
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