View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_30 (Length: 312)
Name: NF6365_low_30
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_30 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 6740911 - 6740599
Alignment:
| Q |
1 |
tcttcctcttacaaccacaatgcctatgttggcaagagaatccaacttgagaatttatcatcataaagaaaaagataatccaatttgagannnnnnncat |
100 |
Q |
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| T |
6740911 |
tcttcctcttacaaccacaatgcctatgttggcaagagaatccaacttgagaatttatcatcataaagaaaaagagaatccaatttgagatttttttcat |
6740812 |
T |
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| Q |
101 |
catatcactcaattgttcccacgcaaaagtattaaa-gggcaagttgtgaaaatgcagaatttagatcaatgttgttaggaactatacattaatcacgct |
199 |
Q |
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| T |
6740811 |
catatcactcaattgttcccacgcaaaagtattaaaagggcaagttgtgaaaatgcagaatttagatcaatgttgttaggaactatacattaatcacgct |
6740712 |
T |
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| Q |
200 |
tttgaaacatcaatagtgtcgagatcaaccgaactaatcattacaaatttagatcttaaaatatgaattagaatctgaactgttccatctttattgaaca |
299 |
Q |
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| T |
6740711 |
tttgaaacatcagaagtgtcgagatcaaccgaactaatcattataaatttagatcttaaaatatgaattagaatctgaactgttccatctttattgaaca |
6740612 |
T |
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| Q |
300 |
atcacaccaatat |
312 |
Q |
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| T |
6740611 |
atcacaccaatat |
6740599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 6740583 - 6740532
Alignment:
| Q |
261 |
tatgaattagaatctgaactgttccatctttattgaacaatcacaccaatat |
312 |
Q |
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| T |
6740583 |
tatgaattagaatctgatctgttcgatttttattgaacaatcacaccaatat |
6740532 |
T |
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