View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_39 (Length: 253)
Name: NF6365_low_39
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 35290508 - 35290747
Alignment:
| Q |
1 |
ctcattggcaacgtgataacaggctgcggtaaccatagtaaaggaacctcttttgatcaaagtaaaagggatgcccttcaacaaacaatctatgaatatg |
100 |
Q |
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| T |
35290508 |
ctcattggcaacgtgataacaggcggcggtaaccatagtaaaggaaactcttttgatcaaagtaaaagggatgcccttcaacaaacaatctatgaatatg |
35290607 |
T |
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| Q |
101 |
tccacaagatgcagaagctttgcttagctaacaatctaatgcaggtaggtttcacacttaatattttacaaagtttgacaatgtannnnnnnnnnnnnnn |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35290608 |
tccacaagatgcagaagctatgcttagctaacaatctaatgcaggtaggtttcacacttaatattttacaaagtttgacaatgta--ttttttttttttt |
35290705 |
T |
|
| Q |
201 |
nggatctaatttataactattgtctcttcattctaggttcat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
35290706 |
tggatctaatttataactattgtctcttcattctaggttcat |
35290747 |
T |
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