View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_4 (Length: 610)
Name: NF6365_low_4
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 23368811 - 23368978
Alignment:
| Q |
21 |
taatcacatcaagataaactccaattttaacaacattgttgttctcaagtaatgtgcgtagctaatcaagttgaatgttatttaacaaaatttgcaattt |
120 |
Q |
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| T |
23368811 |
taatcacatcaagataagctccaattttaacgacaatgttgttctcaagtaatgtgtgtcgctaatcaagttgaatgttatttagcaaaatttgcaattt |
23368910 |
T |
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| Q |
121 |
cttccaactatgattatgtttggatttaggagattccatattgtaattccgaggttgtagcatttgat |
188 |
Q |
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| T |
23368911 |
cttccaactatgattatgtttggatttaggagattccatattgtaattccgaggttgtagcatttgat |
23368978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 460 - 558
Target Start/End: Original strand, 23369404 - 23369503
Alignment:
| Q |
460 |
ttaatctaatacgcgaacaaatttgaaacaaaatgttagaattaccgtgttaaatgacta-ttttttaatatttggagcaattttacctatttgtatata |
558 |
Q |
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| T |
23369404 |
ttaatctaatacgcgaacaaatttgaaacaaaatgttagaattaccgtgttaaatgactatttttttaacatttggagaaattttacctatttgtatata |
23369503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 362 - 464
Target Start/End: Original strand, 23369113 - 23369215
Alignment:
| Q |
362 |
attgagtttaatcccctacatatgaggttattattagggggtccccattcataggagaaaattggcatccctatatagggttatatctaagatcctgatt |
461 |
Q |
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| T |
23369113 |
attgagtttaaccccctacatatgaggttattattaggggtcccccattcataggagaaaattggcatccctatatagggttgtatctaagttcctgatt |
23369212 |
T |
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| Q |
462 |
aat |
464 |
Q |
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||| |
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| T |
23369213 |
aat |
23369215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 23368969 - 23369010
Alignment:
| Q |
210 |
agcatttgatatattgttggaatctctttaagtaatatttgc |
251 |
Q |
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| T |
23368969 |
agcatttgatatattgttggaatctctttaaggaatatttgc |
23369010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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