View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_40 (Length: 251)
Name: NF6365_low_40
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_40 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 39812880 - 39812630
Alignment:
| Q |
1 |
tttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattg |
100 |
Q |
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| T |
39812880 |
tttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattg |
39812781 |
T |
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| Q |
101 |
aaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagt |
200 |
Q |
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| T |
39812780 |
aaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcaat |
39812681 |
T |
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| Q |
201 |
gttccggccacgagaaaaggtgtatattcttccaacctttgcttctccact |
251 |
Q |
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| T |
39812680 |
gttccggccacgagaaaaggtgtatattcttccaaccattgtttctgcact |
39812630 |
T |
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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 44 - 234
Target Start/End: Complemental strand, 15800825 - 15800635
Alignment:
| Q |
44 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
143 |
Q |
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||||||||||| || |||||||| ||||||||||| || || ||||||||||||||||| |||| || ||| || ||| ||| | | ||||||||||| |
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| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
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| Q |
144 |
gccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggtgtatattcttcca |
234 |
Q |
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| T |
15800725 |
gccattgtggatgcctcatcctgcaagccgcgactcgagtcaaataagtacgacagtgttcgggccacgagaataggtgtatattcttcca |
15800635 |
T |
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