View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6365_low_41 (Length: 245)
Name: NF6365_low_41
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 32902713 - 32902924
Alignment:
| Q |
15 |
atgaacaactgtatgtgtgaaagtgaatttagacaaaatataagttttgcataaggttaaaattaatttcaatatcatgacaatatcgtcgtgactcaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32902713 |
atgaacaactgtatgtgtgaaagtgaatttagacaaaatataagttttgcataaggttaaaattaatttcaatatcatgacaatatcgtcgtgactcaag |
32902812 |
T |
|
| Q |
115 |
aaatttttcattcaatttgtagaagtcttaggagagttgataatatgattatcttcaagactatagatctcttcctccaaactatcataaaagaacgtcg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32902813 |
aaatttttcattcaatttgtagaagtcttaggagagttgataatatgattatcttcaagactatagatctcttcccccaaactatcataaaagaacgtcg |
32902912 |
T |
|
| Q |
215 |
tcttcgcttcaa |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32902913 |
tcttcgcttcaa |
32902924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University