View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_42 (Length: 243)
Name: NF6365_low_42
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_42 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 2800638 - 2800402
Alignment:
| Q |
7 |
aagtatgtaagatttctttccagcatcagcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgag |
106 |
Q |
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| T |
2800638 |
aagtatgtaagatttctttccagcatcaacaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgag |
2800539 |
T |
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| Q |
107 |
ttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2800538 |
ttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttatgtcttaccgtcgatat |
2800439 |
T |
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| Q |
207 |
ccctctccagagtgacacatattgttataccctcacc |
243 |
Q |
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| T |
2800438 |
ccctctccagagtgacacatattgttataacctcacc |
2800402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1680084 - 1680326
Alignment:
| Q |
1 |
gaaatgaagtatgtaagatttctttccagcatcagcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagt |
100 |
Q |
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| T |
1680084 |
gaaataaagtatgtaagatttctttccagcatcatcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagt |
1680183 |
T |
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| Q |
101 |
aacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgt |
200 |
Q |
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| T |
1680184 |
aacgagttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttttgtcttaccgt |
1680283 |
T |
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| Q |
201 |
cgatatccctctccagagtgacacatattgttataccctcacc |
243 |
Q |
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| T |
1680284 |
cgatatccctctccagagtgacacttattgttatatcctcacc |
1680326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 29269804 - 29269599
Alignment:
| Q |
17 |
gatttctttccagcatcagcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| || |||| ||||||||||| | | ||||||||||| |
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| T |
29269804 |
gatttctttccagcatcagcaggtgcagcaaactccagtttggctttcaacttccgctgcagcgacacccttttaattgcaagcagcatgttggttttgg |
29269705 |
T |
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| Q |
117 |
tatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctctccag |
216 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||| | ||||| || | ||||| ||| || |
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| T |
29269704 |
tatcaccaacaacaagccaccacccttcttccttggctttcggatacctaggagcatcaacaggtcctacttctgttttaccttcaagatcccgctcaag |
29269605 |
T |
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| Q |
217 |
agtgac |
222 |
Q |
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|||||| |
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| T |
29269604 |
agtgac |
29269599 |
T |
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