View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_7 (Length: 541)
Name: NF6365_low_7
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 530
Target Start/End: Original strand, 47501648 - 47502166
Alignment:
| Q |
23 |
ggctaaacgtggggttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggtgcgtgcgtgtatt |
122 |
Q |
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| T |
47501648 |
ggctaaacgtggggttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggtgc----gtgtatt |
47501743 |
T |
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| Q |
123 |
atcttcatatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacactatgaaataaatatctcagcgggaactaa |
222 |
Q |
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| T |
47501744 |
atcttcatatatatttgcttgttttttcaatgtcatctaatttgagaccttattgcccaataaaagtacaatatgaaataaatatctcagcgagaac--- |
47501840 |
T |
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| Q |
223 |
ttaaattatttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatataaaag--------ttta-------tga |
307 |
Q |
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| T |
47501841 |
-taaattatttaaatttgggttgttggatcaagattgagtgacccgtatttcaaaccgagtagtgttatatatagcaggacacttatttactaatattga |
47501939 |
T |
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| Q |
308 |
tctacatcatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactactaatattggcgtt |
407 |
Q |
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| T |
47501940 |
tctacataatttcaactaatttgacctaaaagtttatgaagttcgtccacccagatccaaaccctagtaaaaagaagaaaatactgctaatattggcgtt |
47502039 |
T |
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| Q |
408 |
tnnnnnnnnnnnnnnnnnnngataatatgggtggttatagact----tgtgttattttaaagtttcaaaatcaacaagtacttaaattgattaattttta |
503 |
Q |
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| T |
47502040 |
taaaaaaatgaaaaagaaaagataatatgggtgcttatagacttgtgtgtgttattttaaagtttcaaaatcaacaagtacttaaattgattaattttta |
47502139 |
T |
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| Q |
504 |
aagactgactttttgcatgtgatgatg |
530 |
Q |
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| T |
47502140 |
aagactgactttttgcatgtgatgatg |
47502166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 25670994 - 25670924
Alignment:
| Q |
39 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
109 |
Q |
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||||||| | |||| || ||||||||||| || ||| |||| |||||||||| ||||||||||||||||| |
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| T |
25670994 |
attgattattctggtggttatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt |
25670924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 31606165 - 31606235
Alignment:
| Q |
39 |
attgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
109 |
Q |
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||||||| ||| ||||| | ||| ||||| || ||| |||||||||| ||||| ||||||||||||||||| |
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| T |
31606165 |
attgattatgccggggggtttgtaattcatctatcttctggtgttgcaggtttcactgctgcttattgggt |
31606235 |
T |
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