View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6365_low_9 (Length: 480)
Name: NF6365_low_9
Description: NF6365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6365_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 37408999 - 37408534
Alignment:
| Q |
1 |
acttcaccgatgatccctgcaacttcgccggcgtttactgcgccaccgataaagtcattgcactcagtctaggagaatctagagccggttcacctggcct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37408999 |
acttcaccgatgatccctgcaacttcgccggcgtttactgcgccaccgataaagtcattgcactcagtctaggagaatctagagccggttcacctggcct |
37408900 |
T |
|
| Q |
101 |
cacaggaaaaatcgacatcgccatcggaaaactctcgtctctcgtagatttaaccgtttctccggggagaatttacggtcatctccctcagtccatttca |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37408899 |
cacaggaaaaatcgacaccgccatcggaaaactctcgtctctcgtagatttaaccgtttctccggggagaatttacggtcatctccctcagtccatttca |
37408800 |
T |
|
| Q |
201 |
cagttgaagaatctcaggtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaatgtccgaactattgatc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37408799 |
cagttgaagaatctcaggtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaatgtccgaactattgatc |
37408700 |
T |
|
| Q |
301 |
taagttacaatcagctcgccggaactattcctccgtcaatcggaaaattgccggagttaaagaaccttattctccgtcataaccgtctcactggttcagt |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37408699 |
taagttacaatcagctcgccggaactattcctccgtcaatcggaaaattgccggagttaaagaaccttattctccgtcataaccgtctcgctggttcagt |
37408600 |
T |
|
| Q |
401 |
tccatcattcgcatcggctcgaaacctaaacaggctcgatctaaagcataacacactcacaggttc |
466 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
37408599 |
tccatcattcgcatcggctcgaaacctaaaccggctcgatctaaagcataacacactcaccggttc |
37408534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 335
Target Start/End: Complemental strand, 40085295 - 40085121
Alignment:
| Q |
161 |
tccggggagaatttacggtcatctccctcagtccatttcacagttgaagaatctcaggtttctcggtattagtcggaatttcatctccggtgagattccg |
260 |
Q |
| |
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|||||| ||||| || |||| ||| ||||| |||||||| |||||||||||||||||||| ||| ||| | || ||||||||||||||||||||| |
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| T |
40085295 |
tccgggaagaatatatggtcctcttcctcaaaccatttcaagcttgaagaatctcaggtttcttggtgttaacagaaacttcatctccggtgagattccg |
40085196 |
T |
|
| Q |
261 |
gcagggcttggtcaacttcgtaatgtccgaactattgatctaagttacaatcagctcgccggaactattcctccg |
335 |
Q |
| |
|
|| | | | ||| | | || | | | |||||||||||||| |||||||||||||| |||||| ||||||||| |
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| T |
40085195 |
gcggagttaggtgagttacgcagtcttcgaactattgatcttagttacaatcagctaaccggaaaaattcctccg |
40085121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 358
Target Start/End: Original strand, 5643842 - 5643982
Alignment:
| Q |
218 |
gtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaatgtccgaactattgatctaagttacaatcagctc |
317 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||||||||||||||| || |||| ||| | ||| || |||| || || ||||||||| | || |
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| T |
5643842 |
gtttctcggcatcagctggaatttcatctccgacgagattccggcagggattagtcagctttgcaatctcagaacaatcaatttaagttacagaaacctt |
5643941 |
T |
|
| Q |
318 |
gccggaactattcctccgtcaatcggaaaattgccggagtt |
358 |
Q |
| |
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| | || | ||||||||||||||||||||||||||||||| |
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| T |
5643942 |
tcggaaattgttcctccgtcaatcggaaaattgccggagtt |
5643982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 358
Target Start/End: Complemental strand, 25092339 - 25092199
Alignment:
| Q |
218 |
gtttctcggtattagtcggaatttcatctccggtgagattccggcagggcttggtcaacttcgtaatgtccgaactattgatctaagttacaatcagctc |
317 |
Q |
| |
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||||||||| || || ||||||||||||||| ||||||||||||||| || |||| ||| | ||| || |||| || || ||||||||| | || |
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| T |
25092339 |
gtttctcggcatcagctggaatttcatctccgacgagattccggcagggattagtcagctttgcaatctcagaacaatcaatttaagttacagaaacctt |
25092240 |
T |
|
| Q |
318 |
gccggaactattcctccgtcaatcggaaaattgccggagtt |
358 |
Q |
| |
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| | || | ||||||||||||||||||||||||||||||| |
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| T |
25092239 |
tcggaaattgttcctccgtcaatcggaaaattgccggagtt |
25092199 |
T |
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