View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6366_high_2 (Length: 464)
Name: NF6366_high_2
Description: NF6366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6366_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Original strand, 34630420 - 34630856
Alignment:
| Q |
11 |
cagagaaaaagcatgccataaaagatagtaaaggtgtttgcatttttgttnnnnnnncagtagacgcagtttagcatattcgaatcggtgttgatcatca |
110 |
Q |
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| T |
34630420 |
cagagaaaaagcatgccataaaagatagtaaaggtgtttgcatttttgttaaaaaaacagtagacgcagtttagcatattcgaatcggtgttgatcatca |
34630519 |
T |
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| Q |
111 |
agtttttgctacaatcacaagacaaagaatagtttagctgaaaaactctgaaggaaacagaaacagattttaataaattaaacttgttattaaggtatgt |
210 |
Q |
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| T |
34630520 |
agttttttctacaatcacaagacaaataatagtttagctgaaaaactctgaaggaaacagaaacagattttaataaattaaacttgttattaaggtatgt |
34630619 |
T |
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| Q |
211 |
aaaagaatacatgcatttacagagaagagaagagtgaattcatacataattttctggggatttcactgaagtattcaataatgtcaataaatacaaaatt |
310 |
Q |
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| T |
34630620 |
aaaagaatacatgcatttacagagaagagaagagtgaattcatacataattttctggggatttcactgaagtattcaataatgtcaataaatacaaaatt |
34630719 |
T |
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| Q |
311 |
atagcatataaccatattgtataaaagctcgctacggtgaggaggatggccgtttgtaggagggtggacgacatagttcacagtcgtggaggatgatgtc |
410 |
Q |
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| T |
34630720 |
atagcatataatcatattgtataaaagctcgctgcggtgaggaggatggccgtttgtaggagggtggacgacatagttcatagtcgtggaggatgatgtc |
34630819 |
T |
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| Q |
411 |
tggcgttcgtagtggggttggaatgggtgtcgaaagt |
447 |
Q |
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| T |
34630820 |
tggcgtccgtagtggggttggaatgggtgtcgaaagt |
34630856 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 18591661 - 18591593
Alignment:
| Q |
343 |
tacggtgaggaggatggccgtttgtaggagggtggacgacatagttcacagtcgtggaggatgatgtct |
411 |
Q |
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| T |
18591661 |
tacggtgaggagggaggccgtttgctggagggaggaaaacatagttcacaatggtggaggatgatgtct |
18591593 |
T |
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