View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6366_high_4 (Length: 321)
Name: NF6366_high_4
Description: NF6366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6366_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 43741071 - 43741381
Alignment:
| Q |
1 |
taatcacgaaagtcattcatttcgctcaagattccgatcagaacagaatgtttctcgcaaaattagacggttttattccgttaatggttagttttcttga |
100 |
Q |
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| T |
43741071 |
taatcatgaaagtcattcatttcgctcaagattccgatcagaacagaacgtttctcgcgaaattagacggttttattccgttaatggttagttttcttga |
43741170 |
T |
|
| Q |
101 |
taatgttgagaatgttgacaaaagcattgaatttcttgaacagactttaacggtgttaggtttgattctggaaaaaattaaagttcgtgaaggattgaag |
200 |
Q |
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| T |
43741171 |
taatgttgagaatgttgacaaaagcattgaatttcttgaacagactttaacggtgttaggtttgattctggaaaaaattaaagttcgtgaaggattgaag |
43741270 |
T |
|
| Q |
201 |
aaccttgtgttaaaaggaaagaacaaaaaatgcttggattcaatggttctcgttttacaaaaaggaagcaacaattcaagaatcgtaaccgccagggttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43741271 |
aaccttgtgttaaaaggaaagaacaaaaaatgcttggattcaatggttctcgttttacaaaaaggaagcaacaattcaagaatcgcaaccgccagggttt |
43741370 |
T |
|
| Q |
301 |
tgaaattcatc |
311 |
Q |
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||||||||||| |
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| T |
43741371 |
tgaaattcatc |
43741381 |
T |
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