View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6366_high_5 (Length: 282)
Name: NF6366_high_5
Description: NF6366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6366_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 40232550 - 40232292
Alignment:
| Q |
8 |
cgaagaatatgcctaaaacgccactcattcccatgcagatccttggccaccaattcctgtgtaggtggttgctttgacatatcctatcaccaaacaacaa |
107 |
Q |
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| T |
40232550 |
cgaaaaatatgcctaaaacgccactcattcccatgcagatccttggccaccaattcctgtgtaggtggttgctttgacatatcctatcaccaaacaacaa |
40232451 |
T |
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| Q |
108 |
acaccatcaatttcatccatatggaaaaaacagaaggaggaagaagagggaac--agaacaaaccagaggaggaagacattcatcagcatgtcgtctaag |
205 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40232450 |
acaccatcaatttcatccatatgga-aaaacagaaggaggaagaagagggaacagagaacaaaccagaggaggaagacattcatcagcatgtcgtctaag |
40232352 |
T |
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| Q |
206 |
tacagaaaaaccaccatgagtactggtatcagatgcggtcaacgttttacaaaacgaatg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40232351 |
tacagaaaaaccaccatgagtactggtatcagatgcggtcaacgttttacaaaacgaatg |
40232292 |
T |
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