View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6366_low_1 (Length: 584)
Name: NF6366_low_1
Description: NF6366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6366_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 74 - 574
Target Start/End: Complemental strand, 40546260 - 40545760
Alignment:
| Q |
74 |
catggaaaatttgagaactatatcattcaaataagtcagccaaatattactgtgtttctgtttgaaaatcaaggagaccacactgttttgtaaggaaaat |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546260 |
catggaaaatttgagaactatatcattcaaataagtcagccaaatattactgtgtttctgtttgaaaatcaaggagaccacactgttttgtaaggaaaat |
40546161 |
T |
|
| Q |
174 |
ttgaacctggtaaatgagagttttacaaagtaaaactgataaaacttcaaatatctctatcatctcaatatttggaaatataggcaattcagcatagata |
273 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546160 |
ttgaacctggtaaatgagagttttacaaagtaaaaatgataaaacttcaaatatctctatcatctcaatatttggaaatataggcaattcagcatagatg |
40546061 |
T |
|
| Q |
274 |
taaagtgccgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattactttccttcatgattgctaaaattaatccgtata |
373 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |
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| T |
40546060 |
taaagtggcgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattactttctttcacgattactaaaattaatccgtata |
40545961 |
T |
|
| Q |
374 |
aataatttctctttgaatcaaacgtataaattttatcaaatcataaattctgaaaataaattactacagctcagacaaggaaacatgaaggttcaatcca |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545960 |
aataatttctctttgaatcaaacgtataaattttatcaaatcataaattctgaaaataaattactacagctcagacaaggaaacatgaaggttcaatcca |
40545861 |
T |
|
| Q |
474 |
aatgcaaaagcaacaaagttatggtgcaatcagagctatgagtgaagagaactaaacagaaatctaatagcaacaaaattttcaatctggtcacaggttc |
573 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545860 |
aatgcaaaagcaacaaaattatggtgcaatcagagctatgagtgaagagaactaaacagaaatctaatagcaacaaaattttcaatctggtcacaggttc |
40545761 |
T |
|
| Q |
574 |
t |
574 |
Q |
| |
|
| |
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|
| T |
40545760 |
t |
40545760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 241 - 406
Target Start/End: Complemental strand, 31790423 - 31790258
Alignment:
| Q |
241 |
atatttggaaatataggcaattcagcatagatataaagtgccgtcataataaatgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattac |
340 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||||||| |||| ||||||||||||| | |||| |||| |||||||||| |
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| T |
31790423 |
atatttggaaatataggcaattcatcatagatgtaaagtggcatcatactaaatgtaatctgcggtcatttcaaacaggcgttttaatcggatgcattac |
31790324 |
T |
|
| Q |
341 |
tttccttcatgattgctaaaattaatccgtataaataatttctctttgaatcaaacgtataaattt |
406 |
Q |
| |
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|||| ||| ||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31790323 |
tttctttcgaaattactaaggttaatccgtataaataatttctatttgaatcaaacgtataaattt |
31790258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 567
Target Start/End: Complemental strand, 31790253 - 31790151
Alignment:
| Q |
465 |
ttcaatccaaatgcaaaagcaacaaagttatggtgcaatcagagctatgagtgaagagaactaaacagaaatctaatagcaacaaaattttcaatctggt |
564 |
Q |
| |
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|||||||||||||||||||||||||| || | |||||| | |||||| |||||||||||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
31790253 |
ttcaatccaaatgcaaaagcaacaaaattgcgttgcaattatagctattagtgaagagaacacaacaaaaatctaatagcaacaaaagtttcaatctggt |
31790154 |
T |
|
| Q |
565 |
cac |
567 |
Q |
| |
|
||| |
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|
| T |
31790153 |
cac |
31790151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 509 - 567
Target Start/End: Complemental strand, 32033519 - 32033461
Alignment:
| Q |
509 |
ctatgagtgaagagaactaaacagaaatctaatagcaacaaaattttcaatctggtcac |
567 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |
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| T |
32033519 |
ctattagtgaagagaacacaacaaaaatctaatagcaacaaaagtttcaatctggtcac |
32033461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 31790880 - 31790848
Alignment:
| Q |
19 |
cttcaacctaccaagacagattagtatatggat |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
31790880 |
cttcaacctaccaagacagattagtatatggat |
31790848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 31790835 - 31790792
Alignment:
| Q |
76 |
tggaaaatttgagaactatatcattcaaataagtcagccaaata |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
31790835 |
tggaaaatatgagaactatatcattcaaacgagtcagccaaata |
31790792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 40546305 - 40546272
Alignment:
| Q |
19 |
cttcaacctaccaagacagattagtatatggatc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |
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|
| T |
40546305 |
cttcaacctaccaagacagattagtatatgaatc |
40546272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 5163233 - 5163014
Alignment:
| Q |
357 |
taaaattaatccgtataaataatttctctttgaatcaaacgtataaattt----tatcaaatcataaattctgaaaataaattactacagctcagacaag |
452 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
5163233 |
taaagttaatccgtagaaataatttctctttgaatcaaacgtttgaacttagtttatcaaatcataaattctgaaaataaattactacaactcaga--ag |
5163136 |
T |
|
| Q |
453 |
gaaacatgaaggttcaatccaaatgcaaaagcaacaaagttatggtgcaatcagagctatgagtgaagagaactaaacagaaatctaatagcaacaaaat |
552 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5163135 |
gaaacatgaaggttcaatccaaatgcaaaagcaacaaaattgtggtgtaatcagagctatgagtgaagcgaactaaacagaaatctaatagcaacaaaat |
5163036 |
T |
|
| Q |
553 |
tttcaatctggtcacaggttct |
574 |
Q |
| |
|
|||||||||||||||| ||||| |
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|
| T |
5163035 |
tttcaatctggtcacaagttct |
5163014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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