View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6366_low_7 (Length: 240)
Name: NF6366_low_7
Description: NF6366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6366_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 240
Target Start/End: Original strand, 27145283 - 27145521
Alignment:
| Q |
2 |
tcatatccaaattggaaattctattctctagctggaaaagacaaatgtataatccataaccattcagtaaatgcaagtcagcaaactatacctttattgc |
101 |
Q |
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| T |
27145283 |
tcatatccaaattggaaattctattctctagctggaaaagacaaatgtataatccataaccattcagtaaatgcaagtcagcaaactatacctttattgc |
27145382 |
T |
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| Q |
102 |
tgtatatagtgttcctttaatttgagctgtaagaacagaaagttagaactctgctaaaatgaaagaaccattgggtttgacatgattaatgatcacatgg |
201 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27145383 |
tgtatatagcgtccctttaatttgagctgtaagaacagaaagttagaactctgctaaaatgaaagaaccattgagtttgacatgattaatgatcacatgg |
27145482 |
T |
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| Q |
202 |
agttgtaaaacctaacaatcttacactgaaaatcagagc |
240 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
27145483 |
agttgtaaaacctaagaatcttacactgaaaatcagagc |
27145521 |
T |
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