View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6366_low_9 (Length: 238)
Name: NF6366_low_9
Description: NF6366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6366_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 50111527 - 50111736
Alignment:
| Q |
13 |
aatatcagcaccatattagaaaattaaacatgccaaactatgaagtagaaatttcaaagtcactccctcccgaagtaacacaacaacagagtatgctagt |
112 |
Q |
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| T |
50111527 |
aatatcagcaccatattagaaaattaaacatgccaaactattaagtagaaatttcaaagtcactccctcccgaagtaacacaacaacagagtatgctagt |
50111626 |
T |
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| Q |
113 |
agggcacccacacgcgaagttatcgtgcccagtccggaaatgcttcttccttcggtagttgtgccagaagagccttctgctgcagtcatcgagcctagtc |
212 |
Q |
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| T |
50111627 |
agggcacccatgcgtgaagttatcgttcctggtccggaaatgcttcttccttcggtagttgtgccagaagagccttctgctgcagtcatcgagcctagtc |
50111726 |
T |
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| Q |
213 |
aggaagtgcc |
222 |
Q |
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||||| |||| |
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| T |
50111727 |
aggaaatgcc |
50111736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 12790380 - 12790312
Alignment:
| Q |
62 |
aatttcaaagtcactccctcccgaagtaacacaacaacagagtatgctagtagggcacccacacgcgaa |
130 |
Q |
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|||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
12790380 |
aatttcgaagtcactccctcacaaagaaacacaacaacagagtatactagtagggcacccatacgcgaa |
12790312 |
T |
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