View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6367_high_1 (Length: 607)
Name: NF6367_high_1
Description: NF6367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6367_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 20 - 567
Target Start/End: Complemental strand, 13858839 - 13858295
Alignment:
| Q |
20 |
atttaaactaagatgcttttgttttggtttcattaaacgatttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttagatggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13858839 |
atttaaactaagatgcttttgttttggtttcattaaacgatttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttagatggtt |
13858740 |
T |
|
| Q |
120 |
cataatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattagtatagcctctatgatgtgatgttatgtgtggagtgcagag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
13858739 |
cataatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattagtatagcctctatgatgtgttgt---gtgtggagtgcagag |
13858643 |
T |
|
| Q |
220 |
aattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctgg |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13858642 |
aattattatgcagtagtttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctgg |
13858543 |
T |
|
| Q |
320 |
ttgtaaggtaagtgaattttgtagcttcatgcttttctgtagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatataga |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13858542 |
ttgtaaggtaagtgaattttgtagcttcatgcttttctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatataga |
13858443 |
T |
|
| Q |
420 |
attacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgcaaaattaactctga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13858442 |
attacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgcaaaattaactctga |
13858343 |
T |
|
| Q |
520 |
gctgattgtataacttgtatgtattatgtataacaatctgaaacttgt |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13858342 |
gctgattgtataacttgtatgtattatgtataacaatctgaaacttgt |
13858295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 186 - 599
Target Start/End: Original strand, 40141767 - 40142179
Alignment:
| Q |
186 |
ctctatgatgtgatgttatgtgtggagtgcagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtag |
285 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40141767 |
ctctatgatgtgttgttgtgtgtggag--cagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtag |
40141864 |
T |
|
| Q |
286 |
taaattgatacctagttactgatatgtgatctggttgtaaggtaagtgaattttgtagcttcatgcttttctgtagaaggtagttgatctcaggggataa |
385 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
40141865 |
taaattgatacctatttactgatatgtgatctggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataa |
40141964 |
T |
|
| Q |
386 |
tccgtagatatgaattttctgagtatcatatag-aattacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaacct |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40141965 |
tccgtagatatgaattttctgagtatcatatagaaattacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaacct |
40142064 |
T |
|
| Q |
485 |
tagatgatttataattcctgcaaaattaactctgagctgattgtataacttgtatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagt |
584 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40142065 |
tagatgatttataattcctgcaaatttaactctgagctgattgtataacttgtatgtattatgtataacaatctgaaacttgtagttttggtaaatgagt |
40142164 |
T |
|
| Q |
585 |
taatcagcctatgct |
599 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
40142165 |
taatcagcctatgct |
40142179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 35258690 - 35258642
Alignment:
| Q |
232 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctctt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35258690 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctctt |
35258642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 232 - 599
Target Start/End: Original strand, 32028914 - 32029275
Alignment:
| Q |
232 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttgtaaggtaag |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32028914 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttgtaaggtaag |
32029013 |
T |
|
| Q |
332 |
tgaattttgtagcttcatgcttttctgtagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaattacatagtag |
431 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
32029014 |
tgaattttgtagcttcat------ctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatataaaattacatagtag |
32029107 |
T |
|
| Q |
432 |
ctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgcaaaattaactctgagctgattgtata |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32029108 |
ctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactctgagctgattgtata |
32029207 |
T |
|
| Q |
532 |
acttgtatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttaatcagcctatgct |
599 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32029208 |
atgtatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttaatcagcctatgct |
32029275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 32028361 - 32028571
Alignment:
| Q |
20 |
atttaaactaagatgcttttgttttggtttcattaaacgatttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttagatggtt |
119 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32028361 |
atttaaactaagatgcttt-gttttggtttcattgaacgattcaattacatgttggcttcttcattgagtaatgatacacaacttgaaacttagatggtt |
32028459 |
T |
|
| Q |
120 |
cataatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattagtatagcctctatgatgtgatgttatgtgtggagtgcagag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
32028460 |
cataatatgtataacaattctagcttggtctaggtctagtctattttgtgtctcaattagtatagcctctatgatgtgttgttgtgtgtggagtgcagag |
32028559 |
T |
|
| Q |
220 |
aattattatgca |
231 |
Q |
| |
|
| |||||||||| |
|
|
| T |
32028560 |
agttattatgca |
32028571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 321 - 599
Target Start/End: Complemental strand, 9540514 - 9540236
Alignment:
| Q |
321 |
tgtaaggtaagtgaattttgtagcttcatgcttttctgtagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaa |
420 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
9540514 |
tgtaaggtaagtgaagcttgtagcttcatgcttttctgcagaaggtagttgatctcaagggataatccgtagatatgaattttctgagtatcatataaaa |
9540415 |
T |
|
| Q |
421 |
ttacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgcaaaattaactctgag |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9540414 |
ttacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactttgag |
9540315 |
T |
|
| Q |
521 |
ctgattgtataacttgtatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttaatcagcctatgct |
599 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9540314 |
ctgattgtataacttatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttcatcagcctatgct |
9540236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 26052862 - 26052977
Alignment:
| Q |
20 |
atttaaactaagatgcttttgttttggtttcattaaacgatttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttagatggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26052862 |
atttaaactaagatgcttttgttttggtttcattgaacgatttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttggatggtt |
26052961 |
T |
|
| Q |
120 |
cataatatgtataaca |
135 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26052962 |
cataatatgtataaca |
26052977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 26053240 - 26053296
Alignment:
| Q |
232 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaa |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
26053240 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctcttggcagtaa |
26053296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 29088969 - 29089121
Alignment:
| Q |
20 |
atttaaactaagatgcttttgttttggtttcattaaacgatttaattacatgttggcttcttcattgattaatgatacacaacttgaaacttagatggtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29088969 |
atttaaactaagatgcttttgttttggtttcatagaacgatttaattacatgttggcttcatcattgattaatgatacacaacttgaaacttagatggtt |
29089068 |
T |
|
| Q |
120 |
cataatatgtataacaattctagcttggtctaggtctagtctattttgtgtct |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29089069 |
cataatatgtataacaattctagcttggtctaggtctagtctattttgtgtct |
29089121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 8635802 - 8635843
Alignment:
| Q |
232 |
gtagcttggttttgatatgatttcatgtgataagccatactt |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8635802 |
gtagcttggttttgatatgatttcatgtgataaaccatactt |
8635843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 15403582 - 15403618
Alignment:
| Q |
158 |
gtctattttgtgtctcaattagtatagcctctatgat |
194 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
15403582 |
gtctgttttgtgtctcaattagtagagcctctatgat |
15403618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University