View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6367_low_2 (Length: 486)
Name: NF6367_low_2
Description: NF6367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6367_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 470
Target Start/End: Original strand, 38608848 - 38609315
Alignment:
| Q |
12 |
tcatcacatgcaacctaactagaacatacagtgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
111 |
Q |
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| T |
38608848 |
tcatcacatgcaacctaactagaacatacattgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
38608947 |
T |
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| Q |
112 |
ggnnnnnnngaacaacgtagcatatccatagagagctaatcaa--------caagacccttatttgccaatgcataccaaaatgtcaccaaaacacgagt |
203 |
Q |
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| T |
38608948 |
ggaaaaaaagaacaacgtagcatatccatacagagctaatcaaataatcaacaaaacccttatttgccaatacataccaaaatgtcaccaaagcacgagt |
38609047 |
T |
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| Q |
204 |
atcatttgcaaa-agtataacaaaccatattgtgacagtactttgaacgatacctgaacctacgaataatatatgacacacaaacaaagagcaatgtgcc |
302 |
Q |
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| T |
38609048 |
atcattggcaatcagtatcacaaaccatattgtgacagtactttgaacgatacctgaacctacaaataatatatgacacacaaacaaagagcaatgtgac |
38609147 |
T |
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| Q |
303 |
tcatataacttgataaactgacgacacaataacctaacatcattttattccttcgaaacatgttgtttaaatacaaattttgaagaaattaacttatatt |
402 |
Q |
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| T |
38609148 |
tcatataacttgataaactgacgacacaataacctaacatcattttattccttcggaacatgttgtttaaatacaaattttgaagaaattaacttatatt |
38609247 |
T |
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| Q |
403 |
tgcaataaacacaatgcaaacaagctttacaaagagacggtagagagatatcatagaacttatatttg |
470 |
Q |
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| T |
38609248 |
tgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcatagaacttatatttg |
38609315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 393 - 458
Target Start/End: Original strand, 38609304 - 38609369
Alignment:
| Q |
393 |
aacttatatttgcaataaacacaatgcaaacaagctttacaaagagacggtagagagatatcatag |
458 |
Q |
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| T |
38609304 |
aacttatatttgcaataaacacaatgcaaacaagctttacaaagagacgatagagagatatcatag |
38609369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 458
Target Start/End: Original strand, 38604036 - 38604267
Alignment:
| Q |
226 |
accatattgtgacagtactttgaacgatacctgaacctacgaataatatatgacacacaaacaaagagcaatgtgcctcatataacttgataaactgacg |
325 |
Q |
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| T |
38604036 |
accaaattgtgatagtactctgaacgacacttggacctgcgtataatttacggcacacaaatagaca-caatgcgacacaaataacatgataaattgaca |
38604134 |
T |
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| Q |
326 |
acacaataacctaacatcattttattccttcgaaacatgttgtttaaatacaaattttgaagaaattaacttatatttgcaataaacacaatgcaaacaa |
425 |
Q |
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| T |
38604135 |
atacaatgacctaagatcattttatccctctaaaacatgttgtctaattactagttttgaagaaattaaattatatctgcaattaacaaaatgcaaacaa |
38604234 |
T |
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| Q |
426 |
gctttacaaagagacggtagagagatatcatag |
458 |
Q |
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| T |
38604235 |
gtttcacagagagaggatagagagacatcatag |
38604267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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