View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6367_low_5 (Length: 251)

Name: NF6367_low_5
Description: NF6367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6367_low_5
NF6367_low_5
[»] chr2 (1 HSPs)
chr2 (11-251)||(17989624-17989864)
[»] scaffold0277 (2 HSPs)
scaffold0277 (27-78)||(967-1018)
scaffold0277 (27-78)||(10100-10151)
[»] chr6 (2 HSPs)
chr6 (27-78)||(28782847-28782898)
chr6 (27-78)||(28790048-28790099)
[»] chr4 (11 HSPs)
chr4 (180-251)||(18720767-18720841)
chr4 (144-183)||(18652116-18652155)
chr4 (144-183)||(18676174-18676213)
chr4 (144-183)||(18686214-18686253)
chr4 (144-183)||(18720704-18720743)
chr4 (144-183)||(18728140-18728179)
chr4 (180-226)||(18652179-18652225)
chr4 (180-226)||(18686277-18686323)
chr4 (180-251)||(18676237-18676311)
chr4 (180-251)||(18696083-18696157)
chr4 (180-251)||(18728203-18728277)
[»] scaffold0419 (1 HSPs)
scaffold0419 (27-78)||(11194-11245)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 17989624 - 17989864
Alignment:
Q  11 cagagacacatcttcaatcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatggtatacctgaaccaatgaatctagttatggtg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17989624 cagagacacatcttcaatcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatggtatacctgaaccaatgaatctagttatggtg 17989723  T
Q  111 cnnnnnnncttttgtttcagtatgttccaagttctgcaaactttctgtctctgaaactctcacttccacaaattgtggtgatgaagcattgagatactca 210  Q
    |       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17989724 ctttttttcttttgtttcagtatgttccaagttctgcaaactttctgtctctgaaactctcacttccacaaattgtggtgatgaagcattgagatactca 17989823  T
Q  211 tcgaattttctctttcaacaaggatcggttaatatcacatc 251  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  17989824 tcgaattttctctttcgacaaggatcggttaatatcacatc 17989864  T

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Target: scaffold0277 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 967 - 1018
Alignment:
Q  27 atcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatg 78  Q
    |||| ||||||||||||| || |||||||||||||||||||||| |||||||    
T  967 atcatttgaaaaacttatgcaggtagaaacaattaattagtttataataatg 1018  T

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Target: scaffold0277; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 10100 - 10151
Alignment:
Q  27 atcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatg 78  Q
    |||| ||||||||||||| || |||||||||||||||||||||| |||||||    
T  10100 atcatttgaaaaacttatgcaggtagaaacaattaattagtttataataatg 10151  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 28782898 - 28782847
Alignment:
Q  27 atcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatg 78  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  28782898 atcatttgaaaaacttatgcaagtagaaacaattaattagcttataataatg 28782847  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 28790099 - 28790048
Alignment:
Q  27 atcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatg 78  Q
    |||| ||||||||||||| || |||||||||||||||||||||| |||||||    
T  28790099 atcatttgaaaaacttatgcaggtagaaacaattaattagtttataataatg 28790048  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 18720767 - 18720841
Alignment:
Q  180 aaattgtggtgatgaagcattgagatactcatcgaattttctctttcaac---aaggatcggttaatatcacatc 251  Q
    |||||||| | |||||||||||||||| ||||| ||||||||||||| ||   |||||| ||| |||||||||||    
T  18720767 aaattgtgataatgaagcattgagatattcatctaattttctctttctactataaggattggtgaatatcacatc 18720841  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 18652116 - 18652155
Alignment:
Q  144 ctgcaaactttctgtctctgaaactctcacttccacaaat 183  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18652116 ctgcaaaatttctgtctctgaaactcccacttccacaaat 18652155  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 18676174 - 18676213
Alignment:
Q  144 ctgcaaactttctgtctctgaaactctcacttccacaaat 183  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18676174 ctgcaaaatttctgtctctgaaactcccacttccacaaat 18676213  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 18686214 - 18686253
Alignment:
Q  144 ctgcaaactttctgtctctgaaactctcacttccacaaat 183  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18686214 ctgcaaaatttctgtctctgaaactcccacttccacaaat 18686253  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 18720704 - 18720743
Alignment:
Q  144 ctgcaaactttctgtctctgaaactctcacttccacaaat 183  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18720704 ctgcaaaatttctgtctctgaaactcccacttccacaaat 18720743  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 18728140 - 18728179
Alignment:
Q  144 ctgcaaactttctgtctctgaaactctcacttccacaaat 183  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  18728140 ctgcaaaatttctgtctctgaaactcccacttccacaaat 18728179  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 18652179 - 18652225
Alignment:
Q  180 aaattgtggtgatgaagcattgagatactcatcgaattttctctttc 226  Q
    |||||||| | |||||||||||||||| ||||| |||||||||||||    
T  18652179 aaattgtgataatgaagcattgagatattcatctaattttctctttc 18652225  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 18686277 - 18686323
Alignment:
Q  180 aaattgtggtgatgaagcattgagatactcatcgaattttctctttc 226  Q
    |||||||| | |||||||||||||||| ||||| |||||||||||||    
T  18686277 aaattgtgataatgaagcattgagatattcatctaattttctctttc 18686323  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 18676237 - 18676311
Alignment:
Q  180 aaattgtggtgatgaagcattgagatactcatcgaattttctctttcaac---aaggatcggttaatatcacatc 251  Q
    |||||||| | |||||||||||||||| ||||| | ||||||||||| ||   |||||| ||| |||||||||||    
T  18676237 aaattgtgataatgaagcattgagatattcatctatttttctctttctactataaggattggtgaatatcacatc 18676311  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 18696083 - 18696157
Alignment:
Q  180 aaattgtggtgatgaagcattgagatactcatcgaattttctctttcaac---aaggatcggttaatatcacatc 251  Q
    |||||||| | |||||||||||||||| ||||| |||| |||||||| ||   |||||| ||| |||||||||||    
T  18696083 aaattgtgataatgaagcattgagatattcatctaattctctctttctactataaggattggtgaatatcacatc 18696157  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 18728203 - 18728277
Alignment:
Q  180 aaattgtggtgatgaagcattgagatactcatcgaattttctctttcaac---aaggatcggttaatatcacatc 251  Q
    |||||||| | |||||||||||||||| ||||| |||||||||| || ||   |||||| ||| |||||||||||    
T  18728203 aaattgtgataatgaagcattgagatattcatctaattttctctatctactataaggattggtgaatatcacatc 18728277  T

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Target: scaffold0419 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 11245 - 11194
Alignment:
Q  27 atcaattgaaaaacttattcaagtagaaacaattaattagtttacaataatg 78  Q
    |||| ||||||||||||| || |||||||||||||| ||||||| |||||||    
T  11245 atcatttgaaaaacttatgcaggtagaaacaattaagtagtttataataatg 11194  T

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