View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6368_high_2 (Length: 600)
Name: NF6368_high_2
Description: NF6368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6368_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 23 - 584
Target Start/End: Original strand, 51008384 - 51008945
Alignment:
| Q |
23 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
122 |
Q |
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| T |
51008384 |
attcaccctctacacttcacctaccatagtaacagcctccaatatatatgcatataaacaagataatattcttgtgataattagttgcatcatgcttata |
51008483 |
T |
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| Q |
123 |
agacattcattggtataagcaactttgtttctacttgatttgcttagataatatttttggtata----agctgttttatgtatgcatatgatctaaatat |
218 |
Q |
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| T |
51008484 |
agacattcattggtataagcaaatttgtttctacttgatttgcttagataatatttttggtatatataagctgttttatgtatgcatatgatctaaatat |
51008583 |
T |
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| Q |
219 |
tttgatgatgatgattcagttaactattgctgttatttaagcttattgtatgaatataaagaataaattctactgannnnnnnggatgtatgcatgtgag |
318 |
Q |
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| T |
51008584 |
tttgatgatgatgattcagttaactattgctgtcatttaagcttattgtatgaatataaagaataaattctactgatttttttgcatgtatgcatgtgag |
51008683 |
T |
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| Q |
319 |
tatttaaaaaatgcatattctaattgtacattatgtcattaattatctgatatattccttacaaacaaatcatatatataagacatgacaaaattatcac |
418 |
Q |
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| T |
51008684 |
tatttaaaaaatgaatattctaattgtacattatgtcatta----tctgatatattccttacaaacaaatcatatatataagacatgacaaaattatcac |
51008779 |
T |
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| Q |
419 |
atgatgtatgattctgatatctgacaaattttattatggtacattttgtgtgtttgctagctagctagctaggtagtaaaagtttcagcatctattggat |
518 |
Q |
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| T |
51008780 |
atgatgtatgattctgatatctgacaaattttattatggtacattttgtgtgtttgctagctagctagctaggtagtaaaagtttcagcatctattggat |
51008879 |
T |
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| Q |
519 |
tcttattaattattaagagtgtgacatgaacaatttcatcatgcaaaacattactgaaagattaag |
584 |
Q |
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| T |
51008880 |
tcttattaattattaagagtgtgacatgaacaatttcatcatgcaaaacattactgaaagattaag |
51008945 |
T |
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