View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6368_high_3 (Length: 428)
Name: NF6368_high_3
Description: NF6368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6368_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 30789382 - 30788984
Alignment:
| Q |
11 |
cacagaccgacccagtaaccgaaaatcccttactttgccattcttgtaaacacttattgagctctgattcagtccttgaacaagtgtgtacagcagcacc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30789382 |
cacagaccgacccagtaaccgaaaatcccttactttgccattcttgtaaacacttactgagctctgattcagtccttgaacaagtgtgtacagcagcacc |
30789283 |
T |
|
| Q |
111 |
aaatgtaacaagatcattcactatggcatgcctaaacaatgtgtcaaatgaatggatggattaaaatctattcttaataaaagtatcatctctttggtaa |
210 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30789282 |
aaatgcaacaagatcattcactatggcatgcctaaacaatgtgtcaaatgaatggatggattaaaatcttttcttaataaaagtatcatctctttggtaa |
30789183 |
T |
|
| Q |
211 |
aatgttactaaagctctttagtaatacctaacaattgttcaaatgtaactagatctcaattatgttgcagtgttagtccgtgtgcaaaaacctttaaacg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30789182 |
aatgttactaaagctctttagtaatacctaacaattgtccaaatgtaactagatctcaattatgttgcagtgttagtccgtgtgcaaaaacctttaaacg |
30789083 |
T |
|
| Q |
311 |
acactaatcttaaaacggagagtgtaaaagataatgaagtatttttggctagatcaaaataaagactacatatgaataatgatgcagggtgttgaagat |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30789082 |
acactaatcttaaaacggagagtgtaaaagataatgaagtatttttggctagatcaaaataaagactacatatgaataatgatgcagggtgttgaagat |
30788984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University