View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6368_high_5 (Length: 371)
Name: NF6368_high_5
Description: NF6368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6368_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 2358454 - 2358788
Alignment:
| Q |
18 |
aaaaattattctacccttatgtgacttaactcacgtatgtatataacccaacgtaatttaagtcattttaaaatacaaccaatataacttaaatcatgtt |
117 |
Q |
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| T |
2358454 |
aaaaattattctacc-ttacgtgacttaactcacgtatgtgtataacccaacgtgacttaagtcatattgaaatacaaccaatataacttaaattatgtt |
2358552 |
T |
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| Q |
118 |
tcgaataccgtgagttaactcatgttggtaacaaacatgcnnnnnnntttctttgcatatcaatataacatggtatagtatagagagagtataattaaat |
217 |
Q |
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| T |
2358553 |
tcgaataccgtgagttaacttatgtcggtaacaaacatgcaaaaaaatttctttgcatatcaatataacatggtatagtatagagagagtgcaattaaat |
2358652 |
T |
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| Q |
218 |
ctagaaacaattgagcaccttgacacatttaaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagcagaagtatacatta |
317 |
Q |
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| T |
2358653 |
ctggaaacaattgagcaccttgacacatttaaattggaaatttttatttaatatttttacacataatgttgtaaaaatagtatagtagaagtatacatca |
2358752 |
T |
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| Q |
318 |
tgctgttcatgctgacatgcatgtgcatgtatcatg |
353 |
Q |
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| T |
2358753 |
tgctgttcatgctgacatgcatgtgcatgtatcatg |
2358788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 31643243 - 31643387
Alignment:
| Q |
199 |
agagagagtataattaaatctagaaa-caattgagcaccttgacacatttaaa-ttggaaatttttatttaatatttttacacataatgttgtaaaaata |
296 |
Q |
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| T |
31643243 |
agagagggtacaattaagtctagaaaaccattaagcaccctgacacatataaaattggaaatttt-atttaatttttttacacatgatgttgtaaaaat- |
31643340 |
T |
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| Q |
297 |
gtatagcagaagtatacattatgctgttcatgctgacatgcatgtgcatgtatcatg |
353 |
Q |
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| T |
31643341 |
----------agtatacatcatgctgttcatgctgacatgcatgtgcatgtatcatg |
31643387 |
T |
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