View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6368_low_3 (Length: 457)
Name: NF6368_low_3
Description: NF6368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6368_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 439
Target Start/End: Original strand, 7801864 - 7802294
Alignment:
| Q |
10 |
acatcatcatcaccacttaatgnnnnnnnttgaagatatggatttgcaagaattgtgtacctgcctggcctttatgtctacttcgatctaggacaggagt |
109 |
Q |
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| T |
7801864 |
acatcatcatcaccacttattgaaaaaaattgaagatatggatttgcaagaattgtgtacctgcctgtcctttatgtctgcttcgatctaggacaggagt |
7801963 |
T |
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| Q |
110 |
aatttctctaataaccctctgagcatcaacctcaacagactgcatttttccagaactacaattggtatgataatcaatgctacctccaagagatcttata |
209 |
Q |
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| T |
7801964 |
aatttctctaataaccctctcagcatcaacctcaacagactgcatttttccagaactacaattggtatgataatcaatgctacctccaagagatcttatc |
7802063 |
T |
|
| Q |
210 |
aaaaaccgctgtcttctgaaaacaggcaaagaagccagtcgcatacaattctttgcacaatacaacaagggtaactgagaattcatgaccacatgtttca |
309 |
Q |
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| T |
7802064 |
aaaaaccgctgtcttctgaaaacaggcgaagaagccagtcgcatacaattctttgcacaatacaacaagggtaactgagaattcatgaccacatgtttca |
7802163 |
T |
|
| Q |
310 |
ttaacatgaccaaacagcaa-cccctattcacaaacccaaacatgaataccttaaaaacaaaaacccccgattctaatatcaattatttttttagaggac |
408 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7802164 |
ttaacatgaccaaacagcaaccccctattcacaaacccaaacatgaataccttaaaaacaaaaacccccgattctaatgtcaattatttttttagaggac |
7802263 |
T |
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| Q |
409 |
atagcacaccaatacaaccatgaattcacac |
439 |
Q |
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| T |
7802264 |
ataacacaccaacacaaccatgaattcacac |
7802294 |
T |
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