View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6368_low_5 (Length: 373)

Name: NF6368_low_5
Description: NF6368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6368_low_5
NF6368_low_5
[»] chr5 (6 HSPs)
chr5 (1-230)||(20914267-20914509)
chr5 (299-370)||(20922218-20922290)
chr5 (166-223)||(20893041-20893098)
chr5 (299-370)||(20914578-20914650)
chr5 (1-132)||(20921909-20922040)
chr5 (160-213)||(20922085-20922136)
[»] chr4 (2 HSPs)
chr4 (69-149)||(43433470-43433550)
chr4 (299-370)||(43434263-43434335)
[»] scaffold0265 (5 HSPs)
scaffold0265 (299-370)||(6372-6444)
scaffold0265 (69-132)||(2501-2565)
scaffold0265 (69-132)||(7390-7454)
scaffold0265 (1-47)||(2587-2634)
scaffold0265 (1-47)||(7476-7523)
[»] chr1 (5 HSPs)
chr1 (299-370)||(21826340-21826412)
chr1 (69-126)||(21778869-21778926)
chr1 (69-132)||(21825356-21825420)
chr1 (1-47)||(21825287-21825334)
chr1 (162-194)||(21778787-21778819)
[»] chr8 (1 HSPs)
chr8 (166-224)||(27276712-27276768)
[»] chr2 (1 HSPs)
chr2 (166-224)||(8264666-8264724)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 20914267 - 20914509
Alignment:
Q  1 atatgatcaagagtgtgtgtgccttggtttgattcctatgggtgatannnnnnnnnnnnnnnnnnnnngtaaagtcattcttaattgaaatgaatgcatg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||                     |||||||| |||||||||| ||||||||||||    
T  20914267 atatgattaagagtgtgtgtgccttggtttgattcctatgggtgatatttttatttttaatgatttttgtaaagtcgttcttaattggaatgaatgcatg 20914366  T
Q  101 tcattgttctttgaatggttcaagaaaatgaa--------------ggatgaacccagatttgtnnnnnnnnnggggggttggagagtgattggattgaa 186  Q
    |||||||||||||||||||| |||||||||||              ||||||||||| |||||          |||||||||||||||||||||||||||    
T  20914367 tcattgttctttgaatggttgaagaaaatgaattgaagaacatgaaggatgaacccaaatttg-aaaaaaaaaggggggttggagagtgattggattgaa 20914465  T
Q  187 aggaaaatctaattaatttgatggtttaaattgtaaaaggtcat 230  Q
    | ||||||||||||||||||||||||| ||||||||||||||||    
T  20914466 atgaaaatctaattaatttgatggtttgaattgtaaaaggtcat 20914509  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 20922218 - 20922290
Alignment:
Q  299 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  20922218 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattgtccaccaatttttaaaggc 20922290  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 20893098 - 20893041
Alignment:
Q  166 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20893098 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaa 20893041  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 20914578 - 20914650
Alignment:
Q  299 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 370  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  20914578 tttatttttatgatggaggacacgtggctgtttcgtattggtttgggttaattgcccaccaattttcaaaggc 20914650  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 20921909 - 20922040
Alignment:
Q  1 atatgatcaagagtgtgtgtgccttggtttgattcctatgggtgatannnnnnnnnnnnnnnnnnnnngtaaagtcattcttaattgaaatgaatgcatg 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||                     |||||| |||||||||||| ||||||||||||    
T  20921909 atatgatctagagtgtgtgtgccttggtttgattcctatgggtgatatttttatttttaatgatttttgtaaagccattcttaattggaatgaatgcatg 20922008  T
Q  101 tcattgttctttgaatggttcaagaaaatgaa 132  Q
    |||||||||||||||||||| ||||| |||||    
T  20922009 tcattgttctttgaatggttgaagaagatgaa 20922040  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 20922085 - 20922136
Alignment:
Q  160 ggggggttggagagtgattggattgaaaggaaaatctaattaatttgatggttt 213  Q
    |||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  20922085 ggggggttggagagt--ttggattgaaagaaaaatctaattaatttgatggttt 20922136  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 43433470 - 43433550
Alignment:
Q  69 gtaaagtcattcttaattgaaatgaatgcatgtcattgttctttgaatggttcaagaaaatgaaggatgaacccagatttg 149  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  43433470 gtaaagccattcttaattggaatgaatgcatgtcattgttctttgaatggttgaagaagatgaaggatgaacccagatttg 43433550  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 43434263 - 43434335
Alignment:
Q  299 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 370  Q
    ||||||||  ||||||||||||| ||||||||| |||||||||||||| || || ||||||||||||||||||    
T  43434263 tttattttgttgatggaggacacgtggctgttttttattggtttgggtaaaatgcccaccaattttcaaaggc 43434335  T

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Target: scaffold0265 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 299 - 370
Target Start/End: Complemental strand, 6444 - 6372
Alignment:
Q  299 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 370  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6444 tttatttttatgatggaggacacgtggctgtttcttattggtttgggttaattgcccaccaattttcaaaggc 6372  T

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Target: scaffold0265; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 2565 - 2501
Alignment:
Q  69 gtaaagtcattcttaattgaaatgaatgcatgtcattg-ttctttgaatggttcaagaaaatgaa 132  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  2565 gtaaagccattcttaattggaatgaatgcatgtcattgtttctttgaatggttgaagaagatgaa 2501  T

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Target: scaffold0265; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Complemental strand, 7454 - 7390
Alignment:
Q  69 gtaaagtcattcttaattgaaatgaatgcatgtcattg-ttctttgaatggttcaagaaaatgaa 132  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  7454 gtaaagccattcttaattggaatgaatgcatgtcattgtttctttgaatggttgaagaagatgaa 7390  T

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Target: scaffold0265; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2634 - 2587
Alignment:
Q  1 atatgatcaagagtgtgtgtgcc-ttggtttgattcctatgggtgata 47  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2634 atatgatcaagagtgtgtgtgccattggtttgattcctatgggtgata 2587  T

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Target: scaffold0265; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7523 - 7476
Alignment:
Q  1 atatgatcaagagtgtgtgtgcc-ttggtttgattcctatgggtgata 47  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7523 atatgatcaagagtgtgtgtgccattggtttgattcctatgggtgata 7476  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 21826340 - 21826412
Alignment:
Q  299 tttatttttatgatggaggacacatggctgtttcttattggtttgggttaattg-ccaccaattttcaaaggc 370  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21826340 tttatttttatgatggaggacacgtggctgtttcttattggtttgggttaattgcccaccaattttcaaaggc 21826412  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 21778926 - 21778869
Alignment:
Q  69 gtaaagtcattcttaattgaaatgaatgcatgtcattgttctttgaatggttcaagaa 126  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  21778926 gtaaagccattcttaattggaatgaatgcatgtcattgttctttgaatggttgaagaa 21778869  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 21825356 - 21825420
Alignment:
Q  69 gtaaagtcattcttaattgaaatgaatgcatgtcattg-ttctttgaatggttcaagaaaatgaa 132  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||||    
T  21825356 gtaaagccattcttaattggaatgaatgcatgtcattgtttctttgaatggttgaagaagatgaa 21825420  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21825287 - 21825334
Alignment:
Q  1 atatgatcaagagtgtgtgtgcc-ttggtttgattcctatgggtgata 47  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21825287 atatgatcaagagtgtgtgtgccattggtttgattcctatgggtgata 21825334  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 21778819 - 21778787
Alignment:
Q  162 ggggttggagagtgattggattgaaaggaaaat 194  Q
    |||||||||||||||||||||||||||||||||    
T  21778819 ggggttggagagtgattggattgaaaggaaaat 21778787  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 27276712 - 27276768
Alignment:
Q  166 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaaa 224  Q
    ||||||||||||||||||| | ||||| |  ||||||| ||||||||||||||||||||    
T  27276712 ttggagagtgattggattggagggaaatt--aattaatgtgatggtttaaattgtaaaa 27276768  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 8264724 - 8264666
Alignment:
Q  166 ttggagagtgattggattgaaaggaaaatctaattaatttgatggtttaaattgtaaaa 224  Q
    ||||||||||||||||||  | || |||| |||||| | ||||||||||||||||||||    
T  8264724 ttggagagtgattggattagaggggaaatttaattattgtgatggtttaaattgtaaaa 8264666  T

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