View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6369_high_1 (Length: 397)
Name: NF6369_high_1
Description: NF6369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6369_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 35410154 - 35409774
Alignment:
| Q |
16 |
agattagaggaagatcctttgagaaactaatggctt-gtcaaacaatgaaaggagtctgaatagttgcatatatatgaacactcttgtaatggtatcagt |
114 |
Q |
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| T |
35410154 |
agattaaaggaagatcctttgagaaactaatggctttgtcaaacaatgaaaggagtctgaatagttgcatatagatgaacactcttgtaatagta----- |
35410060 |
T |
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| Q |
115 |
tgtagcatgactgataaataaactcattttccaaacataaaaaactttgcatgcgatgtttcaggtctaacaaaaagcaatattatcatgtaataataat |
214 |
Q |
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| T |
35410059 |
----gcatgactaataaataaactcattttccaaacatcaaaaactttgcatgcgatgtttcaggtctaacaaaaagcaatattatcatgtaataataat |
35409964 |
T |
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| Q |
215 |
gagataaaatgataatttttataactctacttcttaaaagacttggttctattatattcagtaggttattgaaatggtaagaagtgaagtttataagaag |
314 |
Q |
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| T |
35409963 |
gagatacaatgataacttttataactctacttcttaaaagacttggttctattatattcaataggttattgaaatggtaagaagtgaagtttataagaag |
35409864 |
T |
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| Q |
315 |
acaaacttaaaaggagagttgttc-----------------caccttggccttgtcttctaaatttttctcataactagcaaatccctct |
387 |
Q |
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| T |
35409863 |
acaaacttaaagggagatttgttccacttacattgtcttttcaccttggccttgtcttctaagtttttctcataactagcaaatccctct |
35409774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 29159878 - 29159982
Alignment:
| Q |
119 |
gcatgactgataaataaactcatttt----ccaaacataaaaaactttgcatgcgatgtttcaggtctaacaaaaagcaatattatcatgtaataataat |
214 |
Q |
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| T |
29159878 |
gcataactgataaataaactcattttttttccaaatataaaaac--tagaatgtgatgtttcaagtctaacaaaaagcaatattatcatgtaataataat |
29159975 |
T |
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| Q |
215 |
gagataa |
221 |
Q |
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| T |
29159976 |
gagataa |
29159982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 341
Target Start/End: Original strand, 29160040 - 29160136
Alignment:
| Q |
246 |
tcttaaaagacttggttctattatattcagtaggttattgaaatggtaagaagtgaagtttataagaagacaaacttaaaagg-agagttgttccac |
341 |
Q |
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| T |
29160040 |
tcttaaaagacttggttctattctacccgctaggtaattgaaatggtaagaattgaagtttacaaggagacaaatttaaacggaagagttgtcccac |
29160136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 29159829 - 29159867
Alignment:
| Q |
32 |
ctttgagaaactaatggcttgtcaaacaatgaaaggagt |
70 |
Q |
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| T |
29159829 |
ctttgagaaactgatggcttgtaaaacaatgaaaggagt |
29159867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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