View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6369_low_1 (Length: 611)
Name: NF6369_low_1
Description: NF6369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6369_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 34 - 597
Target Start/End: Original strand, 43408583 - 43409152
Alignment:
| Q |
34 |
tatgtttgttacttcttcttgaaattaaattaacaaatgttagaaacatacatgagattgaatatggatccatcttttgatgatgcaggctgttgatttt |
133 |
Q |
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| T |
43408583 |
tatgtttgttacttcttcttgaaattaaattaacaaatgttagaaacatacatgagattgaatatggatccatcttttgctgatgcaggctgttgatttt |
43408682 |
T |
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| Q |
134 |
agaagtagtaacaacatgaatatcccacaagcagtaaaggtaa---gcaaacaatca---tcagatcatagtactggatttgattaaatcaacaaaaact |
227 |
Q |
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| T |
43408683 |
agaagtagtcacaacatgaatatcccacaagcagtaaaggtaattagcaaacaatcatcatcagatcatagtactggatttgattagatcaacaaaaact |
43408782 |
T |
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| Q |
228 |
aaataatattgtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagccgtgaacgagataatggaagtgttggcttca |
327 |
Q |
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| T |
43408783 |
atataaaattgtttctaaaaatgatatgataatgaataattaggtatttgaagagctatatgaagcagcggtgaacgagataatggaagtgttggcgtca |
43408882 |
T |
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| Q |
328 |
gtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtg |
427 |
Q |
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| T |
43408883 |
gtgtgcaagacgcacaatttaccattagcactaacatgggctccttgcctacaacaacaacaaggaggaggaaagggaagtagtggtgcatcaggttgtg |
43408982 |
T |
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| Q |
428 |
gtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatca |
527 |
Q |
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| T |
43408983 |
gtgtttcaactatgagttgctgcatatcaacggttgattcagcttgttatgttggtgacatggatgtattgggattccaagaagcgtgcagtgagtatca |
43409082 |
T |
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| Q |
528 |
cctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatatt |
597 |
Q |
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| T |
43409083 |
cctttttaatggacaaggaatagtaggaacagccttcacaacaaccaaaccttgttttgctattgatatt |
43409152 |
T |
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