View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6369_low_3 (Length: 343)
Name: NF6369_low_3
Description: NF6369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6369_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 37914931 - 37914601
Alignment:
| Q |
1 |
atcaaggtaacgtatgtaaggaggagtgttatgggaatttggagtgatgatgaggttggaggtgaagggaaagaagtgttgaagtgttaaggaaagtgag |
100 |
Q |
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| T |
37914931 |
atcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgag |
37914832 |
T |
|
| Q |
101 |
tgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaannnnnnntttgcagtaaaaccaag |
200 |
Q |
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| T |
37914831 |
tgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaagggggggtttgcagtaaaaccaag |
37914732 |
T |
|
| Q |
201 |
aaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttc |
300 |
Q |
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| T |
37914731 |
aaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttc |
37914632 |
T |
|
| Q |
301 |
gttatgatagaatttgatctcgtgatgatga |
331 |
Q |
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| T |
37914631 |
gttatgatagaatttgatctcgtgatgatga |
37914601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 37906768 - 37906446
Alignment:
| Q |
1 |
atcaaggtaacgtatgtaaggaggagtgttatgggaatttggagtgatgatgaggttggaggtgaagggaaagaagtgttgaagtgttaaggaaagtgag |
100 |
Q |
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| T |
37906768 |
atcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgag |
37906669 |
T |
|
| Q |
101 |
tgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtttaannnnnnntttgcagtaaaaccaag |
200 |
Q |
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| T |
37906668 |
tgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacgtttaacagtgggttgacagtaaaaccatg |
37906569 |
T |
|
| Q |
201 |
aaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcataattactgtttc |
300 |
Q |
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| T |
37906568 |
aaatgtcgaagaaggtgagagggagtgttgttggtgatggaagtgaatttggtggtggtgcaacttggctatgttctattaccttcatcataactgtgtt |
37906469 |
T |
|
| Q |
301 |
gttatgatagaatttgatctcgt |
323 |
Q |
| |
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||| |||| ||||||| |||||| |
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| T |
37906468 |
gttgtgattgaatttggtctcgt |
37906446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 37961304 - 37961472
Alignment:
| Q |
5 |
aggtaacgtatgtaaggaggagtgttatgggaatttggagtgatgatgaggttggaggtgaagggaaagaagtgttgaagtgttaaggaaagtgagtgtt |
104 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||| || ||||||||| |||| || || ||||||||| | || |||| |||||||||||||| |
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| T |
37961304 |
aggtaacgtatgtaaggatcggtgttttgggaatttggagggacgatgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtt |
37961403 |
T |
|
| Q |
105 |
tgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgtt |
173 |
Q |
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| T |
37961404 |
tgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgtt |
37961472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 37961526 - 37961584
Alignment:
| Q |
230 |
gttggtgatggaagtgaacttggtggtggtgaaatttgagtctgctctatcaccttcat |
288 |
Q |
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|||||||||| ||||||| |||||||||||| || |||| | || |||||||||||||| |
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| T |
37961526 |
gttggtgatgtaagtgaatttggtggtggtgcaacttgactatgttctatcaccttcat |
37961584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 3782970 - 3782862
Alignment:
| Q |
68 |
ggaaagaagtgttgaagtgttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaaga |
167 |
Q |
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||||||||||||| || || | |||||| |||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
3782970 |
ggaaagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaaga |
3782871 |
T |
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| Q |
168 |
tgcgtttaa |
176 |
Q |
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| T |
3782870 |
tgcgtttaa |
3782862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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