View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6370_high_4 (Length: 252)
Name: NF6370_high_4
Description: NF6370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6370_high_4 |
 | |
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| [»] scaffold1353 (2 HSPs) |
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| [»] scaffold1352 (2 HSPs) |
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| [»] scaffold0881 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3578745 - 3578507
Alignment:
| Q |
1 |
aaaattacaaaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3578745 |
aaaattacaaaccatatacaaatattgtaaaatagtccacccattatatgaaatggatattcttgaagttacttggacattcttcttgtgatggaacaat |
3578646 |
T |
|
| Q |
101 |
atatgtagtgaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatgacattaagtacatatcaaattcaagcaacacaatata |
200 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3578645 |
atatgtggtgaaaataatt-atgtgctaagttaattttagagtggatgaacaaaatcacaatgacattaagtacatatcaaattcaagcaacacaatata |
3578547 |
T |
|
| Q |
201 |
aaatagtaaaaaatatagctaatgatcttgaaagttacct |
240 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3578546 |
aaatagtaaaagatatagctaatgatcttgaaagttacct |
3578507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 3580359 - 3580526
Alignment:
| Q |
2 |
aaattacaaaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagt--cttcttgtgatggaacaa |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||| |
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| T |
3580359 |
aaattacaaaccatatacaaatattgtaaaatagtacacccattatatgaaatggatattcttaaagaaacttggatataaccttcttgtgatggaacaa |
3580458 |
T |
|
| Q |
100 |
tatatgtagtgaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatgacatt |
168 |
Q |
| |
|
|||||| ||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |
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|
| T |
3580459 |
tatatgcggtgaaaacaatt-atgtgctaagtttattttaaggtgggtgaacaaaatcacaatgacatt |
3580526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 10027457 - 10027624
Alignment:
| Q |
5 |
ttacaaaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
10027457 |
ttacaaaccatatacaaatattgtaaaatagtacacccattatatgaaatggatattcttgaagttacttagacaaccttcttgtgatagaacaatatat |
10027556 |
T |
|
| Q |
105 |
gtagtgaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatgacattaagta |
173 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
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|
| T |
10027557 |
atagtgaaaacaa-ttatgtgctaagttaattttaaggtggatgaacaaaatcacaatgagattaagta |
10027624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 10026003 - 10025842
Alignment:
| Q |
2 |
aaattacaaaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaata |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |
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|
| T |
10026003 |
aaattacaaaccatatacaaatattgtaaaatagtacacccattatatgaaatggatattcttgaagttacttgtacaacctttttgtgatggaacaata |
10025904 |
T |
|
| Q |
102 |
tatgtagtgaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatga |
164 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
10025903 |
tatgtggtgaaaacaa-ttatgtgctaagttaattttaagatgggtgaacaaaatcacaatga |
10025842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 6 - 168
Target Start/End: Original strand, 20244569 - 20244730
Alignment:
| Q |
6 |
tacaaaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
20244569 |
tacaaaccatatacaaatattgtaaaatagtacacccgttatatgaaatggatattcttgatgttacttggacaactttcttgtgatggaacaatatatg |
20244668 |
T |
|
| Q |
106 |
tagtgaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatgacatt |
168 |
Q |
| |
|
| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20244669 |
tgttgaaaacaa-ttatgtgctaagttcattttaaagtgggtgaacaaaatcacaatgacatt |
20244730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 20523161 - 20523019
Alignment:
| Q |
20 |
aaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatgtagtgaaaataatt |
119 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||||||| |||||| || | |
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|
| T |
20523161 |
aaatattgtaaaatagtacacccattatatgaaatggaaattcttgaagttacttggacatcctacttgtgatagaacaatatatgtgatgaaaacaa-t |
20523063 |
T |
|
| Q |
120 |
tatgtgctaagttaattttaaagtgggtgaacaaaatcacaatg |
163 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
20523062 |
tatgtgctaagttaaatttaaggtgggtgaacaaaattacaatg |
20523019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 171
Target Start/End: Complemental strand, 8730476 - 8730375
Alignment:
| Q |
69 |
ttacttggacagtcttcttgtgatggaacaatatatgtagtgaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatgacatt |
168 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
8730476 |
ttacttggacatccttcttgtgatggaacaatatatgcggtgaaaacaatt-atgtgctaagttaattttaaggtgggtgaacaaaatcgcaatgacatt |
8730378 |
T |
|
| Q |
169 |
aag |
171 |
Q |
| |
|
||| |
|
|
| T |
8730377 |
aag |
8730375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 20526422 - 20526543
Alignment:
| Q |
25 |
ttgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatgtagtgaaaataatttatgt |
124 |
Q |
| |
|
||||||||| || |||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||||| ||| | ||||||| ||||||| || |||||| |
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|
| T |
20526422 |
ttgtaaaatagtacacctattatataaaatggatattcttgaagttacttagacagccttattgtgattgaatagtatatgtggtgaaaa-aaattatgt |
20526520 |
T |
|
| Q |
125 |
gctaagttaattttaaagtgggt |
147 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
20526521 |
gctaagttaattttaaggtgggt |
20526543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 240
Target Start/End: Complemental strand, 8729935 - 8729857
Alignment:
| Q |
162 |
tgacattaagtacatatcaaattcaagcaacacaatataaaatagtaaaaaatatagctaatgatcttgaaagttacct |
240 |
Q |
| |
|
||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8729935 |
tgacattaagtgcatatgaaaatcaagcaacacaatataaaatagtaaaaaatatagctaatgatctttgaagttacct |
8729857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 8710266 - 8710187
Alignment:
| Q |
166 |
attaagtacatatcaaattcaagcaacacaatataaaatagtaaaaaat-----atagctaatgatcttgaaagttacct |
240 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
8710266 |
attaagtacacattaaaatcaagcaacacaatataaaatagtaaaaaaatataaatagctaatgatattgaaagttacct |
8710187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 20244937 - 20244999
Alignment:
| Q |
184 |
tcaagcaacacaatataaaatagtaaaaaata----tagctaatgatcttgaaagttacctat |
242 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
20244937 |
tcaagcatcacaatataaaatagtaaaaaatatgagtagctattgatctttgaagttacctat |
20244999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1353 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold1353
Description:
Target: scaffold1353; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 163
Target Start/End: Original strand, 1648 - 1799
Alignment:
| Q |
10 |
aaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatgtagt |
109 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||| ||| || || ||||||||||||||||||||||||| || |
|
|
| T |
1648 |
aaccatatacaaatattgtaaaatagtacacccattatatgaaatgcatatccttgaagtttcttagatagccttcttgtgatggaacaatatatgtggt |
1747 |
T |
|
| Q |
110 |
gaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatg |
163 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
1748 |
gaaaataa-ttatgtgc-aagttaaatttaaggtgggtgaacaaaatcacaatg |
1799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1353; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 186 - 65
Alignment:
| Q |
25 |
ttgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatgtagtgaaaataatttatgt |
124 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| || | ||||||| ||||||| || |||||| |
|
|
| T |
186 |
ttgtaaaatagtacacccattatatgaaatggatattcttgaagttacttagactgccttcttgtgatgaaatagtatatgtggtgaaaacaa-ttatgt |
88 |
T |
|
| Q |
125 |
gctaagttaattttaaagtgggt |
147 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
87 |
gctaagttaattttaaggtgggt |
65 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1352 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold1352
Description:
Target: scaffold1352; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 342 - 191
Alignment:
| Q |
10 |
aaccatatacaaatattgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatgtagt |
109 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| |||| ||||||||| ||| || || ||||||||||||||||||||||||| || |
|
|
| T |
342 |
aaccatatacaaatattgtaaaatagtacacccattatatgaaatgcatatccttgaagtttcttagatagccttcttgtgatggaacaatatatgtggt |
243 |
T |
|
| Q |
110 |
gaaaataatttatgtgctaagttaattttaaagtgggtgaacaaaatcacaatg |
163 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
242 |
gaaaataa-ttatgtgc-aagttaaatttaaggtgggtgaacaaaatcacaatg |
191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1352; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 1804 - 1925
Alignment:
| Q |
25 |
ttgtaaaattgtccacccattatatgaaatggatattcttgaagttacttggacagtcttcttgtgatggaacaatatatgtagtgaaaataatttatgt |
124 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| || | ||||||| ||||||| || |||||| |
|
|
| T |
1804 |
ttgtaaaatagtacacccattatatgaaatggatattcttgaagttacttagactgccttcttgtgatgaaatagtatatgtggtgaaaacaa-ttatgt |
1902 |
T |
|
| Q |
125 |
gctaagttaattttaaagtgggt |
147 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
1903 |
gctaagttaattttaaggtgggt |
1925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0881 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0881
Description:
Target: scaffold0881; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 4384 - 4417
Alignment:
| Q |
61 |
tcttgaagttacttggacagtcttcttgtgatgg |
94 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
4384 |
tcttgaagatacttggacagtcttcttgtgatgg |
4417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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