View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6370_low_10 (Length: 219)
Name: NF6370_low_10
Description: NF6370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6370_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 51843503 - 51843317
Alignment:
| Q |
19 |
aaacaggtgtgatcctctataaacagatttttgttgaggattgaggatatgttatgttaagttataggtggatgtttctcaaggtttttgttggatacgt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51843503 |
aaacaggtgtgatcctctataaatagatttttgttgaggattgaggatatgttatgttaagttataggtggatgtttctcaaggtttttgttggatacgt |
51843404 |
T |
|
| Q |
119 |
aagatcctatcatttaggttctggttaaatatttgctcaaaaaaggttctggttaaatataacaacttttaagctgtggtatatttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51843403 |
aagatcctatcatttaggttctggttaaatatttgctcaaaaaaggttctggttaaatataacaacttttaagctgtgatatatttt |
51843317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University