View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6370_low_6 (Length: 245)
Name: NF6370_low_6
Description: NF6370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6370_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 53478609 - 53478497
Alignment:
| Q |
132 |
ttaatgatgacaatgttgaaattggacatatgatccatgctaaccatgagggtggatagtgaagttgcactagagtcccacactgctaaggttcgtagct |
231 |
Q |
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| T |
53478609 |
ttaaggatgacaatgttgaaattggacatatgatccatgctaaacatgagggtg-atagtgaagttgcactagagtcacacactgctaaggttcgtagct |
53478511 |
T |
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| Q |
232 |
gtttaatgtatatt |
245 |
Q |
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| T |
53478510 |
gtttaatgtatatt |
53478497 |
T |
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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 36863849 - 36863754
Alignment:
| Q |
17 |
aattctcccactagcattatgtaaagtatcactccacacgaccatacatctgctaactgaaggaaaacacataacaagccagattaaatctccttc |
112 |
Q |
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| T |
36863849 |
aattctcccactagcattatttaaagtatcactccacacgaccatacatctgctaactgaaggaaaacacataacaagccaaattaaatctccttc |
36863754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 544594 - 544538
Alignment:
| Q |
21 |
ctcccactagcattatgtaaagtatcactccacacgaccatacatctgctaactgaa |
77 |
Q |
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| T |
544594 |
ctcccaccagcattacataaagagtcactccacaagaccatacatctgccaactgaa |
544538 |
T |
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