View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6370_low_9 (Length: 226)
Name: NF6370_low_9
Description: NF6370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6370_low_9 |
 | |
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| [»] scaffold1353 (2 HSPs) |
| | |
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| [»] scaffold1352 (2 HSPs) |
| | |
|
| [»] scaffold0881 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 199
Target Start/End: Original strand, 3579193 - 3579387
Alignment:
| Q |
5 |
gagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
3579193 |
gagggtatgaacaatgtttcaatcaataatagtgatgacgaagctagcgttgttgataaaggaaaaggaaatatgattcaaacaaatgaggagttagaat |
3579292 |
T |
|
| Q |
105 |
cttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3579293 |
cttcatcctatttggaagaaaaagtcttagaattttcattacagttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
3579387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 3579914 - 3579723
Alignment:
| Q |
5 |
gagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaat |
104 |
Q |
| |
|
|||||||| || ||||||| |||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
3579914 |
gagggtatcaataatgtttaaatcaataataatgatgatgaagctagcgttgttgataaagaaaaagggaatatgattcaaacaaatgaggagttagaat |
3579815 |
T |
|
| Q |
105 |
cttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctca |
196 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||| ||| ||||||||||| |||| || |||||| |||| |||||||| ||||||||||| |
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|
| T |
3579814 |
cttcatcctatttggaagatgaagtcatagattttgcatcacatttcctacccttttcatatgatgcactataatttgggaaaggtgcctca |
3579723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10027012 - 10026814
Alignment:
| Q |
1 |
aatggagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagtta |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || |
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|
| T |
10027012 |
aatggagggtatcaataatgtttcaatcaataataatgatgatgaagctagcattgttgataaaggaaaagggaatatgattcaatcaaatgaggaattg |
10026913 |
T |
|
| Q |
101 |
gaatcttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||| | ||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
10026912 |
gaatcttcatcctctttggaagaagaagtcctagaatctgcatcacatttcatactctttccacatgatgcactacaatttggggaaggtgcctcaaag |
10026814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 8730486 - 8730648
Alignment:
| Q |
37 |
tgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcctatttggaagaaaaagtcttagaa |
136 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || || ||||| |
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|
| T |
8730486 |
tgatgatgaagctagcgttgctgataaaggaaaagggaatatgattcaaacaaatgaggagttagaaacttcatcctctttggaagaagaaatcctagaa |
8730585 |
T |
|
| Q |
137 |
ttttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8730586 |
gttgcatcacatttcctactctttccacatgatgcactacaatttggggaaggtgcctcaaag |
8730648 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 8710352 - 8710550
Alignment:
| Q |
1 |
aatggagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagtta |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8710352 |
aatggagggtatcaatgatgtttcaatcaataataatgatgatgaagctagcgttgtttataaagaaaaagggaatatgattcaaacaaatgaggagtta |
8710451 |
T |
|
| Q |
101 |
gaatcttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
|||| |||||||| | ||||||| ||||| ||| |||| ||| ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
8710452 |
gaattttcatcctctggggaagaagaagtcctagcatttgcatcacatttcctaccctttccatatgattcactacaatttgggaaaggtgcctcaaag |
8710550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 20523867 - 20523691
Alignment:
| Q |
1 |
aatggagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagtta |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||| || ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
20523867 |
aatggagggtatcaataatgtttcaatcaataataatgatgatgaagctagcgttgttgataatggaaaatggaatacgattcaaacaaatgagaagtta |
20523768 |
T |
|
| Q |
101 |
gaatcttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaa |
178 |
Q |
| |
|
||| ||||||||| |||||||||| || ||||||||||| ||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
20523767 |
gaa-cttcatcctctttggaagaagaaatcttagaatttgcatcacatttcctactctttccacatgatgcactacaa |
20523691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 10026449 - 10026645
Alignment:
| Q |
1 |
aatggagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagtta |
100 |
Q |
| |
|
|||||||||||| || | |||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10026449 |
aatggagggtatcaatagtgtttcaatcaataataatgataatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgagtagtta |
10026548 |
T |
|
| Q |
101 |
gaatcttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
||||||||||||| | || ||||||||||| ||| |||| ||| ||||||||| | |||||| || ||| |||||||||| |||||||||||||||| |
|
|
| T |
10026549 |
gaatcttcatcctctatgaaagaaaaagtcctagcatttgcatcacatttcctgccatttccatatcatgcactacaattt--ggaaggtgcctcaaag |
10026645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 20523634 - 20523690
Alignment:
| Q |
20 |
gtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaat |
76 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
20523634 |
gtttcaatcaataataatgatgatgaagctagcgttgttgataaggaaaaagggaat |
20523690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1353 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold1353
Description:
Target: scaffold1353; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 664 - 836
Alignment:
| Q |
26 |
atcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcctatttggaagaaa |
125 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
664 |
atcaataataatgatgatgaagctagcgttgttgataatgaaaaaaggaatatgattcaaacaaatgaggagttagaa-cttcatcctctttggaagaag |
762 |
T |
|
| Q |
126 |
aagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
|| || |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
763 |
aaatcctagaatttgcatcacatttcctactctttccacatgatgcactacaaattgggttaggtgcctcaaag |
836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1353; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 1182 - 1003
Alignment:
| Q |
20 |
gtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcctatttgg |
119 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
1182 |
gtttcaatcaataataatgatgatgaagctagcgttgttgataaggaaaaagggaatatgattcaaacaaatgagcagttagaatcttcattctctttga |
1083 |
T |
|
| Q |
120 |
aagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
||| ||||| ||| |||| || ||||||||||| |||| || |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
1082 |
aaggggaagtcctagcatttgaatcacatttcctaccctttgcatatgatgcactacaatttggggaaggtgccacaaag |
1003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1352 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: scaffold1352
Description:
Target: scaffold1352; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 1326 - 1154
Alignment:
| Q |
26 |
atcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcctatttggaagaaa |
125 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
1326 |
atcaataataatgatgatgaagctagcgttgttgataatgaaaaaaggaatatgattcaaacaaatgaggagttagaa-cttcatcctctttggaagaag |
1228 |
T |
|
| Q |
126 |
aagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
|| || |||||||| ||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
1227 |
aaatcctagaatttgcatcacatttcctactctttccacatgatgcactacaaattgggttaggtgcctcaaag |
1154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1352; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 808 - 987
Alignment:
| Q |
20 |
gtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcctatttgg |
119 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| || |||| |
|
|
| T |
808 |
gtttcaatcaataataatgatgatgaagctagcgttgttgataaggaaaaagggaatatgattcaaacaaatgagcagttagaatcttcattctctttga |
907 |
T |
|
| Q |
120 |
aagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
||| ||||| ||| |||| || ||||||||||| |||| || |||||| |||||||||||||||||||||| ||||| |
|
|
| T |
908 |
aaggggaagtcctagcatttgaatcacatttcctaccctttgcatatgatgcactacaatttggggaaggtgccacaaag |
987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0881 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0881
Description:
Target: scaffold0881; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 3777 - 3587
Alignment:
| Q |
6 |
agggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaatc |
105 |
Q |
| |
|
|||||||||| ||| ||| ||| |||| || |||||| ||| ||| | ||| | ||||||||||||||||| |||||||||||||| || ||||| || |
|
|
| T |
3777 |
agggtatgaagaattttttaataaataataatgatgaagaatctaacattgatcataaaggaaaagggaatttgattcaaacaaat---gaattagattc |
3681 |
T |
|
| Q |
106 |
ttcatcctatttggaagaaaaagtcttagaattttcattacatttcctactctttccacatgatgtactacaatttggggaaggtgcctcaaag |
199 |
Q |
| |
|
|||||||| || ||||||| ||| | ||| |||| ||| ||||| |||||||||| ||||| ||||| |||||||||||||||||||||| |
|
|
| T |
3680 |
ttcatcctcttcggaagaagaagacctagcatttgcatcacattctaaactctttccatatgatacactacgatttggggaaggtgcctcaaag |
3587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 35915347 - 35915229
Alignment:
| Q |
5 |
gagggtatgaacaatgtttcaatcaatagtagtgatgatgaagctagcgttgttgataaaggaaaagggaatatgattcaaacaaatgaggagttagaat |
104 |
Q |
| |
|
|||||||||||||||||||||| |||| | ||||| || ||| | || |||||||||||||| || | ||||||||| |||||||||||||| | |
|
|
| T |
35915347 |
gagggtatgaacaatgtttcaaataataattatgatgtcgagtctaacattcatgataaaggaaaagaaaagaggattcaaactaatgaggagttagact |
35915248 |
T |
|
| Q |
105 |
cttcatcctatttggaaga |
123 |
Q |
| |
|
||| ||||| || |||||| |
|
|
| T |
35915247 |
ctttatcctcttgggaaga |
35915229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 20326101 - 20326048
Alignment:
| Q |
60 |
ataaaggaaaagggaatatgattcaaacaaatgaggagttagaatcttcatcct |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||| |||| ||| |||||||||| |
|
|
| T |
20326101 |
ataaaggaaaagggaagatgattcaaactaatgtagagtcagattcttcatcct |
20326048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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