View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6371_high_3 (Length: 243)
Name: NF6371_high_3
Description: NF6371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6371_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 32789779 - 32789575
Alignment:
| Q |
20 |
gaagtacccgaatggatctagaacgaatcgtgcaaccaaatctggatattggaaggcaactgggaaggatcgaaaggtgaattctcaagctcgagcagta |
119 |
Q |
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| T |
32789779 |
gaagtacccgaatggatctagaacgaatcgtgcaaccaaatctggatattggaaggcaactgggaaggatcgaaaggtgaattctcaagctcgagcagta |
32789680 |
T |
|
| Q |
120 |
ggggtgaagaaaaccctagtttactatcgaggaagagcaccccatggctctcgtacaaattgggttatgcatgaatatcgacttgatgagagggaatgtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32789679 |
ggggtgaagaaaaccctagtttactatcgaggaagagcaccccatggctctcgtacaaattgggttatgcatgaatatcgacttgatgagagggaatgtg |
32789580 |
T |
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| Q |
220 |
aaacc |
224 |
Q |
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||||| |
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| T |
32789579 |
aaacc |
32789575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 29103039 - 29103239
Alignment:
| Q |
20 |
gaagtacccgaatggatctagaacgaatcgtgcaaccaaatctggatattggaaggcaactgggaaggatcgaaaggtgaattctcaagctcgagcagta |
119 |
Q |
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|||||| || |||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||| |||| |||| || || |
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| T |
29103039 |
gaagtatccaaatggatcaagaaccaatagagcaacaaaatctggatattggaaggcaacggggaaagatcgcaaggtgaatgctcagactcgcgccgtt |
29103138 |
T |
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| Q |
120 |
ggggtgaagaaaaccctagtttactatcgaggaagagcaccccatggctctcgtacaaattgggttatgcatgaatatcgacttgatgagagggaatgtg |
219 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||||||||||| ||||| |||||||| || ||||||| |
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| T |
29103139 |
ggaatgaagaaaaccctagtttactatagaggaagagcaccacatggatctcgcactggttgggttatgcatgagtatcgtcttgatgaaagagaatgtg |
29103238 |
T |
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| Q |
220 |
a |
220 |
Q |
| |
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| T |
29103239 |
a |
29103239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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