View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6371_low_1 (Length: 474)

Name: NF6371_low_1
Description: NF6371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6371_low_1
NF6371_low_1
[»] chr2 (4 HSPs)
chr2 (92-296)||(20554654-20554859)
chr2 (31-94)||(20553791-20553854)
chr2 (321-427)||(16399887-16399996)
chr2 (375-419)||(20554856-20554900)
[»] chr7 (2 HSPs)
chr7 (155-430)||(5515197-5515478)
chr7 (164-197)||(46159372-46159405)
[»] chr4 (6 HSPs)
chr4 (214-351)||(33686813-33686951)
chr4 (160-352)||(21680235-21680430)
chr4 (160-351)||(35452185-35452378)
chr4 (155-336)||(35594072-35594255)
chr4 (254-418)||(39938828-39938992)
chr4 (218-336)||(43623532-43623651)
[»] chr6 (2 HSPs)
chr6 (219-358)||(4465647-4465787)
chr6 (292-358)||(23102847-23102913)
[»] chr1 (5 HSPs)
chr1 (155-428)||(32018275-32018554)
chr1 (268-420)||(49832148-49832304)
chr1 (155-202)||(13571619-13571666)
chr1 (155-202)||(20565251-20565298)
chr1 (160-202)||(44835722-44835764)
[»] chr8 (2 HSPs)
chr8 (218-429)||(37982411-37982624)
chr8 (160-236)||(13582456-13582534)
[»] chr5 (3 HSPs)
chr5 (155-429)||(5862949-5863230)
chr5 (272-430)||(37509128-37509288)
chr5 (160-205)||(1669865-1669910)
[»] chr3 (1 HSPs)
chr3 (387-427)||(43344855-43344895)
[»] scaffold0012 (1 HSPs)
scaffold0012 (155-205)||(99521-99571)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 92 - 296
Target Start/End: Original strand, 20554654 - 20554859
Alignment:
Q  92 aataaaataaaataaatgtcgtgttagtgcttttggttaaaatggatggcaataaatttaccctttttccactttataagcatatattgcatgtatatat 191  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  20554654 aataaaataaaataaatgtcgtgttagtgtttttggttaaaatggatggcattaaatttaccctttttccac-ttacaagcatatattgcatgtatatat 20554752  T
Q  192 aataaatttttataacgc--atgtatccattttatagaggctaataaaagtgtactgcatacatttgatctattgtcttttattttggttgctaataggt 289  Q
    ||||||||||||||||||  || |||||||||  ||||||||||||||  |||| | |||| ||||||||||||| ||||||||||| |||| ||| |||    
T  20554753 aataaatttttataacgcatatatatccatttgttagaggctaataaacctgtattacatatatttgatctattgccttttattttgattgcaaatgggt 20554852  T
Q  290 ttcttaa 296  Q
    |||||||    
T  20554853 ttcttaa 20554859  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 20553791 - 20553854
Alignment:
Q  31 agagatagacacataatatgaaaggagggcgaaggagagagcgattgaaaggagatgatccaat 94  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20553791 agagataaacacataatatgaaaggagggagaaggagagagcgattgaaaggagatgatccaat 20553854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 427
Target Start/End: Complemental strand, 16399996 - 16399887
Alignment:
Q  321 atgacaataataagagatcaagagggtaatactaaaaaatatgggtac---ttgaaattaaaataagagagtaatatcaaaagttttgtaactcattgaa 417  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||||   ||||||||  || | ||| ||| |||||||||||||| ||||||||| |    
T  16399996 atgacaataataagagatcaagagggtagtactaaaaagtatgtgtactggttgaaatttgaaaaggagcgtactatcaaaagttttgcaactcattgga 16399897  T
Q  418 aattccaaat 427  Q
    ||||||||||    
T  16399896 aattccaaat 16399887  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 20554856 - 20554900
Alignment:
Q  375 ttaaaataagagagtaatatcaaaagttttgtaactcattgaaaa 419  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||    
T  20554856 ttaaaataagagagtaataccaagagttttgtaacttattgaaaa 20554900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 430
Target Start/End: Complemental strand, 5515478 - 5515197
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaatttt--tataacgcatgtatccattttatagaggctaataaaagtgtactgcataca 252  Q
    |||| |||||||||| ||||||||||||||||||| ||||||| |||  || |||   |  ||||||||| |||| ||||||||| ||||| || ||| |    
T  5515478 ttttcccactttatatgcatatattgcatgtatatctaataaaatttggtagaacttttacatccattttgtagacgctaataaatgtgtattgtataga 5515379  T
Q  253 tttgatctattgtcttttattttggttgctaatagg-tttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaata 351  Q
    |||||| ||| |||||||||||| ||  |||||||| ||||||| ||| |||||||||||||||| | |||||||||| ||| | || || |||||||||    
T  5515378 tttgatttatcgtcttttatttttgtatctaatagggtttcttactttataatttggagtaagatgagaatgacaatagtaataaattaatagggtaata 5515279  T
Q  352 ctaaaaaatatgggtac---ttgaaattaaaataagagagtaatatcaaaagttttgtaactcattgaaaattccaaattgc 430  Q
    ||  ||| |||| ||||   |||||||| || ||||||| ||||| ||| || |||||||||||| | |||| |||||||||    
T  5515278 ctctaaagtatgtgtactcgttgaaattgaattaagagaataataccaagagatttgtaactcatcggaaatcccaaattgc 5515197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 46159372 - 46159405
Alignment:
Q  164 tttataagcatatattgcatgtatatataataaa 197  Q
    |||||||||||||||||||||||||| |||||||    
T  46159372 tttataagcatatattgcatgtatatctaataaa 46159405  T

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Target: chr4 (Bit Score: 59; Significance: 8e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 214 - 351
Target Start/End: Complemental strand, 33686951 - 33686813
Alignment:
Q  214 atccattttatagaggctaataaaagtgtactgcatacatttgatctattgtcttttattttggttgctaata-ggtttcttaatttgtaatttggagta 312  Q
    ||||||||| |||||||||||||  ||| | |||||  ||||||||||||  |||||||||| ||  |||||| ||||||||| |||||||||| || ||    
T  33686951 atccattttgtagaggctaataagcgtgaattgcatggatttgatctattaccttttatttttgtgtctaataaggtttcttattttgtaattttgaata 33686852  T
Q  313 agatcacaatgacaataataagagatcaagagggtaata 351  Q
    |||| | ||||||||||||||||||| ||||||||||||    
T  33686851 agatgaaaatgacaataataagagattaagagggtaata 33686813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 352
Target Start/End: Original strand, 21680235 - 21680430
Alignment:
Q  160 ccactttataagcatatattgcatgtatatataataaatttttataacgcatgta--tccattttatagaggctaataaaagtgtactgcatacatttga 257  Q
    ||||||||||||||||||||||||||||||  |||||| || | ||  || ||||  ||||| || |||||||| ||||  ||| | |||||| |||| |    
T  21680235 ccactttataagcatatattgcatgtatatccaataaaattgtgtagagcttgtacatccatgttgtagaggctgataagtgtgcattgcatatatttaa 21680334  T
Q  258 tctattgtcttttattttggttgctaatag-gtttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaatac 352  Q
    |||| |  ||||||| || ||| ||||||| ||| |||| ||||||||||||| |||||| | |||||||||| |||||||| |||| ||||||||    
T  21680335 tctacttccttttatatttgtttctaatagagttccttactttgtaatttggaataagatgaaaatgacaatagtaagagattaagatggtaatac 21680430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 160 - 351
Target Start/End: Complemental strand, 35452378 - 35452185
Alignment:
Q  160 ccactttataagcatatattgcatgtatatataataaatttttataacgcatgt--atccattttatagaggctaataaaagtgtactgcatacatttga 257  Q
    |||||||||||| |||||||||||||| ||  |||||| |||| ||  || |||  ||| ||||| |||||||||||||| ||| | |||||| ||||||    
T  35452378 ccactttataagtatatattgcatgtacatccaataaaattttgtagagcttgtacatctattttgtagaggctaataaacgtgaattgcatagatttga 35452279  T
Q  258 tctattgtcttttattttggttgctaata-ggtttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaata 351  Q
     ||| || | |||||||| |||||||||| ||||  ||| ||| ||||||||| |||||||| |||||||||| |||||||| || ||| |||||    
T  35452278 cctactg-catttatttttgttgctaatatggttctttactttataatttggaataagatcataatgacaatagtaagagattaaaaggataata 35452185  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 336
Target Start/End: Complemental strand, 35594255 - 35594072
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaatttttataacgcatgta--tccattttatagaggctaataaaagtgtactgcataca 252  Q
    ||||||||||||||||| |||||||||||||||||  |||||| |||| ||  |  ||||  |||||||| ||||| |||||||| ||||| |||||| |    
T  35594255 tttttccactttataagtatatattgcatgtatattcaataaaattttgtagagtttgtacatccattttgtagagactaataaacgtgtattgcataga 35594156  T
Q  253 tttgatctattgtcttttattttggttgctaataggtttcttaa-tttgtaatttggagtaagatcacaatgacaataataagag 336  Q
    ||| || |||||||||| |||||  || |||||||  ||||| | ||||||||||||| | |||| | |||||||||| ||||||    
T  35594155 tttaatatattgtcttt-atttttatttctaatagagttctttactttgtaatttggaatgagatgagaatgacaatagtaagag 35594072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 418
Target Start/End: Original strand, 39938828 - 39938992
Alignment:
Q  254 ttgatctattgtcttttattttggttgctaataggtttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaatact 353  Q
    ||||| |||||  ||||||||| |||| ||||| | |||||   |||||||||||| |||||| | |||||||||| |||||||| ||||||||||  |     
T  39938828 ttgatttattgcattttatttttgttgataatatggttctt---ttgtaatttggaataagataagaatgacaatactaagagattaagagggtaaagcc 39938924  T
Q  354 aaaaaatatgggtac---ttgaaattaaaataagagagtaatatcaaaagttttgtaactcattgaaa 418  Q
     ||||||||| ||||   ||  |||| |||||||| ||||||| |||||||||||||||| |||||||    
T  39938925 caaaaatatgtgtacccgttagaattgaaataagaaagtaataccaaaagttttgtaacttattgaaa 39938992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 218 - 336
Target Start/End: Complemental strand, 43623651 - 43623532
Alignment:
Q  218 attttatagaggctaataaaagtgtactgcatacatttgatctattgtcttttattttggttgctaataggtttc-ttaatttgtaatttggagtaagat 316  Q
    |||||||||||||||||||  ||||| |||||| |||||| |||    |||||||||| |||| |||||||  || ||| ||||||||||||| ||||||    
T  43623651 attttatagaggctaataagcgtgtattgcatagatttgacctaccaacttttatttttgttgataatagggctccttactttgtaatttggaataagat 43623552  T
Q  317 cacaatgacaataataagag 336  Q
     | |||||||||| ||||||    
T  43623551 tagaatgacaatattaagag 43623532  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 219 - 358
Target Start/End: Original strand, 4465647 - 4465787
Alignment:
Q  219 ttttatagaggctaataaaagtgtactgcatacatttgatctattgtcttttattttggttgctaata-ggtttcttaatttgtaatttggagtaagatc 317  Q
    ||||||||||| ||||||  ||||| |||||| |||||||||||| |||||||| || |||||||||| |||| |||| ||||||||||| |  |||||     
T  4465647 ttttatagaggataataagtgtgtattgcataaatttgatctattatcttttatgtttgttgctaatagggttccttactttgtaatttgtaacaagatg 4465746  T
Q  318 acaatgacaataataagagatcaagagggtaatactaaaaa 358  Q
    | |||||||||| |||||||| || ||||||||||| ||||    
T  4465747 agaatgacaatagtaagagattaaaagggtaatactcaaaa 4465787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 358
Target Start/End: Original strand, 23102847 - 23102913
Alignment:
Q  292 cttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaatactaaaaa 358  Q
    |||| ||||||||||||| |||||| | |||||||||| |||||||| |||| |||||||| |||||    
T  23102847 cttactttgtaatttggaataagatgagaatgacaatagtaagagataaagatggtaatacaaaaaa 23102913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 428
Target Start/End: Original strand, 32018275 - 32018554
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaattttt---ataacgcatgtatccattttatagaggctaataaaagtgtactgcatac 251  Q
    |||| ||||||||||| ||||||||||| |||||| |||||| |||||   | |||   |  |||||||||||| ||  ||||||| ||||| |||| |     
T  32018275 ttttcccactttataatcatatattgcaggtatatctaataatttttttgcagaacctgtacatccattttataaagattaataaacgtgtattgcaaag 32018374  T
Q  252 atttgatctattgtcttttattttggttgctaataggtttcttaa-tttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaat 350  Q
    ||||||||||||| ||||  ||||| ||| ||||| | ||||| | ||||||||||| | ||||||   ||||||||||||||||||| || ||||||||    
T  32018375 atttgatctattgcctttgtttttg-ttgttaatatggttctttactttgtaatttgaaataagatgcgaatgacaataataagagattaatagggtaat 32018473  T
Q  351 actaaaaaatatgggtacttga---aattaaaataagagagtaatatcaaaagttttgtaactcattgaaaattccaaatt 428  Q
    ||  |||| |||| ||||| |    |||| |||||||||||||||| ||| ||||||| |||| || |||||| |||||||    
T  32018474 acccaaaagtatgtgtactcgttagaattgaaataagagagtaataccaagagttttgaaacttatcgaaaatcccaaatt 32018554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 268 - 420
Target Start/End: Original strand, 49832148 - 49832304
Alignment:
Q  268 tttattttggttgctaata-ggtttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaatactaaaaaatatgggt 366  Q
    |||||||  |||||||||| |||| |||| ||||||||||||| | |||| | |||||||| | |||||||| ||||||||||||| ||||| |||| ||    
T  49832148 tttatttctgttgctaataaggttccttactttgtaatttggaatgagatgagaatgacaacagtaagagattaagagggtaataccaaaaagtatgtgt 49832247  T
Q  367 a---cttgaaattaaaataagagagtaatatcaaaagttttgtaactcattgaaaat 420  Q
    |    ||  ||||  |||||||| |||||| ||| |||||||||||| |||| ||||    
T  49832248 attcgttagaattggaataagagggtaataccaagagttttgtaactaattggaaat 49832304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 155 - 202
Target Start/End: Original strand, 13571619 - 13571666
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaattttt 202  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  13571619 tttttccactttataagcatatattgcatgtatatcgaataaaatttt 13571666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 20565298 - 20565251
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaattttt 202  Q
    ||||||||||| |||||||||||||||||||||||  |||||| ||||    
T  20565298 tttttccacttcataagcatatattgcatgtatatccaataaagtttt 20565251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 44835722 - 44835764
Alignment:
Q  160 ccactttataagcatatattgcatgtatatataataaattttt 202  Q
    |||||||||||||||||||||||||||||| | ||||| ||||    
T  44835722 ccactttataagcatatattgcatgtatatctgataaaatttt 44835764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 429
Target Start/End: Original strand, 37982411 - 37982624
Alignment:
Q  218 attttatagaggctaataaaagtgtactgcatacatttgatctattgtcttttattttggttgctaataggtttcttaa-tttgtaatttggagtaagat 316  Q
    ||||| |||||  ||||||| ||| | |||||| ||||||| |||| ||||||||||| |||||||| | | ||||| | ||| ||||||| | ||||||    
T  37982411 attttgtagagattaataaacgtgcattgcatagatttgatatattatcttttatttttgttgctaacaagattctttactttataatttgaaataagat 37982510  T
Q  317 cacaatgacaataataagagatcaagagggtaatactaaaaaatatgggtac---ttgaaattaaaataagagagtaatatcaaaagttttgtaactcat 413  Q
     | ||| |||||| ||||| || |||||||||||| | |    |||| ||||   ||| |||| |||||||| ||||||| ||||||||| |||||||||    
T  37982511 gagaataacaatagtaagaaattaagagggtaatattcagg--tatgtgtacccgttggaattgaaataagatagtaataccaaaagtttcgtaactcat 37982608  T
Q  414 tgaaaattccaaattg 429  Q
    ||||||||||||||||    
T  37982609 tgaaaattccaaattg 37982624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 13582456 - 13582534
Alignment:
Q  160 ccactttataagcatatattgcatgtatatataataaatttttataacgcatgt--atccattttatagaggctaataa 236  Q
    ||||||||||||||||||||||||||||||  |||||| |||| | | || |||  ||||||||| || ||||||||||    
T  13582456 ccactttataagcatatattgcatgtatatcgaataaaattttgttaagcttgtacatccattttgtataggctaataa 13582534  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 429
Target Start/End: Complemental strand, 5863230 - 5862949
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaatttttataacgcatgt---atccattttatagaggctaataaaagtgtactgcatac 251  Q
    |||||||||||||||||||||||| ||||||||||  ||||||  ||| ||  | || |   ||||||||| ||||||  |||||   |||| ||||||     
T  5863230 tttttccactttataagcatatatggcatgtatatccaataaaaatttgtagag-atttcacatccattttgtagaggtaaataagcttgtattgcatag 5863132  T
Q  252 atttgatctattgtcttttattttggttgctaata-ggtttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaat 350  Q
    ||||||  ||||  |||||||||| |||||||| | |||||  |   |||| ||||| | |||||| | |||||||||||||| |||| |||||||||||    
T  5863131 atttgacttattaccttttatttttgttgctaacagggttttgtggattgtcatttgaaataagatgagaatgacaataataatagattaagagggtaat 5863032  T
Q  351 a-ctaaaaaatatgggta---cttgaaattaaaataagagagtaatatcaaaagttttgtaactcattgaaaattccaaattg 429  Q
    | |  ||||||||  |||   ||||||||| ||||||||| |||||| ||| |||||  |||||||||| |||| ||||||||    
T  5863031 accctaaaaatatatgtactccttgaaatttaaataagagtgtaataccaagagtttgttaactcattggaaatcccaaattg 5862949  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 37509288 - 37509128
Alignment:
Q  272 ttttggttgctaataggtttcttaatttgtaatttggagtaagatcacaatgacaataataagagatcaagagggtaatactaaaaaatatgggtact-- 369  Q
    |||| |||||||||||| || |||  |||||||||||| | |||| | ||||| |||| |||||||| |||||| ||||||  |||| |||| | |||      
T  37509288 tttttgttgctaatagggtttttaccttgtaatttggaatgagatgagaatgaaaatagtaagagattaagaggataatacccaaaa-tatgtgcactcg 37509190  T
Q  370 -tgaaattaaaataagagagtaatatcaaaagttttgtaactcattgaaaattccaaattgc 430  Q
     || |||| ||||   ||||||||||||| ||||||||||||||||| |||| | |||||||    
T  37509189 ttggaattgaaatgttagagtaatatcaagagttttgtaactcattggaaatcctaaattgc 37509128  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 1669910 - 1669865
Alignment:
Q  160 ccactttataagcatatattgcatgtatatataataaatttttata 205  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||    
T  1669910 ccactttataagcatatattgcatgtatattcaataaaattttata 1669865  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 43344895 - 43344855
Alignment:
Q  387 agtaatatcaaaagttttgtaactcattgaaaattccaaat 427  Q
    ||||||| ||| |||||||||||||||||||||||||||||    
T  43344895 agtaataacaagagttttgtaactcattgaaaattccaaat 43344855  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 99521 - 99571
Alignment:
Q  155 tttttccactttataagcatatattgcatgtatatataataaatttttata 205  Q
    ||||||||||| ||||| |||||||||||||||||  |||||| |||||||    
T  99521 tttttccacttcataagtatatattgcatgtatatccaataaaattttata 99571  T

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