View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6372_low_1 (Length: 734)
Name: NF6372_low_1
Description: NF6372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6372_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 674; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 10 - 718
Target Start/End: Complemental strand, 36515847 - 36515138
Alignment:
| Q |
10 |
catcatcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagttt |
109 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515847 |
catcctcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagttt |
36515748 |
T |
|
| Q |
110 |
cacgtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacaccttcatcttctgagctaatttttgagatg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515747 |
cacgtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacaccttcatcttctgagctaatttttgagatg |
36515648 |
T |
|
| Q |
210 |
aaattggagcctatttaatatgctatcataccca-attaagaatttcatatattaaaggtgagggttgatattgatgttgtggaaattggatgtacatat |
308 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515647 |
aaattggagcctatttaatatgctatcatacccagattaagaatttcatatattaaaggtgagggttgatattgatgttgtggaaattggatgtacatat |
36515548 |
T |
|
| Q |
309 |
gtggttgagatcaaaccgtatttaagagttttaacctcttacannnnnnnngaaggaagttttaacctcttacatgtcatgctatattttttcattcttt |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515547 |
gtggttgagatcaaaccgtatttaagagttttaacctcttacattttttttgaaggaagttttaacctcttacatgtcatgctatattttttcattcttt |
36515448 |
T |
|
| Q |
409 |
tgaattgtttttacataatgatgatataggagttaccaattaatggagaagctatttaaaatcttcgtgtatgaagagggagaacctcctctttttcatt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515447 |
tgaattgtttttacataatgatgatataggagttaccaattaatggagaagctatttaaaatcttcgtgtatgaagagggagaacctcctctttttcatt |
36515348 |
T |
|
| Q |
509 |
atggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515347 |
atggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctcatgt |
36515248 |
T |
|
| Q |
609 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
708 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36515247 |
ctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgattatgtt |
36515148 |
T |
|
| Q |
709 |
catatcatat |
718 |
Q |
| |
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|||||||||| |
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|
| T |
36515147 |
catatcatat |
36515138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 305 - 718
Target Start/End: Original strand, 36805675 - 36806088
Alignment:
| Q |
305 |
atatgtggttgagatcaaaccgtatttaagagttttaacctcttacannnnnnnngaaggaagttttaacctcttacatgtcatgctatattttttcatt |
404 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36805675 |
atatgtggttgagatcaaaccatatttaagagttttaatctcttacattttttttgaaggaagttttaacctcttacatgtcatgttatattttttcatt |
36805774 |
T |
|
| Q |
405 |
cttttgaattgtttttacataatgatgatataggagttaccaattaatggagaagctatttaaaatcttcgtgtatgaagagggagaacctcctcttttt |
504 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36805775 |
cttttgaattttttttacataatgatgatataggagttaccacttaatggagaagctatttaaaatctttgtgtatgaagagggagaacctcctcttttt |
36805874 |
T |
|
| Q |
505 |
cattatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcagaatccaaatgaagctc |
604 |
Q |
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| T |
36805875 |
cactatggtccttgcaaaaatatatattcaatggagggaatatttatcaacttattggaaaacaatactttgtttcggactcgtaatccaaatgaagctc |
36805974 |
T |
|
| Q |
605 |
atgtctactttcttccatttagtgttgttatgatccttgagcatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgatta |
704 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36805975 |
atgcctactttcttccatttagtgttgttatgatccttgaacatctctttcacccagttattcgtgacaaagctgttttgggaagaactattggtgatta |
36806074 |
T |
|
| Q |
705 |
tgttcatatcatat |
718 |
Q |
| |
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|||||||||||||| |
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|
| T |
36806075 |
tgttcatatcatat |
36806088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 36805408 - 36805593
Alignment:
| Q |
10 |
catcatcatcttgtgagctaactttagtgagattcaaattcatttaacatagtaattgagcagtgtaaaatatgataatgtgagaatttaacccaagttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | | | ||||| |||||||||||||||||||||| ||||||| |
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| T |
36805408 |
catcatcatcttgtgagctaactttaatgagattcaaattcatttaacatagtaatttaacggcgtaaagtatgataatgtgagaatttaactcaagttt |
36805507 |
T |
|
| Q |
110 |
cac-------------gtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacacct |
182 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36805508 |
cacgtgagacatgaaagtgagtattaaaaatagtttcttagcatggaatgcgcccatttaacatttgtgttctcacattcacacct |
36805593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 36805625 - 36805679
Alignment:
| Q |
177 |
acaccttcatcttctgagctaatttttgagatgaaattggagcctatttaatatg |
231 |
Q |
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||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||||| |
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| T |
36805625 |
acaccttcatcttttgagctaaattttgggatgaaattgaagcttatttaatatg |
36805679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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