View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6372_low_5 (Length: 365)
Name: NF6372_low_5
Description: NF6372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6372_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 50370034 - 50369697
Alignment:
| Q |
18 |
tgtagtaccatgcggagcaaaagagattccaccctttctatatattgacatacaattaaacaaatgccaacacacactgcatcagcatcaccaacactca |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50370034 |
tgtagtaccatgcgcagcaaaagagattccaccctttctatatattgacatacaattaaacaaatgccaacacacactgcatcagcatcaccaacactca |
50369935 |
T |
|
| Q |
118 |
actccctcaatccttttccctttttaaaaacttgatcctatccatggaggattctcagtttgacgtgattattgtcggagccggcgtcatgggaagttcc |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50369934 |
actccctcaatccttttcccttgttaaaaacttgatcctatccatggaggattctcagtttgacgtgattattgtcggagccggcgtcatgggaagttcc |
50369835 |
T |
|
| Q |
218 |
accgcctaccaagcagccaaaaggggtctcaaaacactcttgcttgaacaatttgactttctccaccaccgtggctcttcccacggtgaatcccgcacaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50369834 |
accgcctaccaagcagccaaaaggggtctcaaaacactcttgcttgaacaatttgactttctccaccaccgtggctcttcccacggtgaatcccgcacaa |
50369735 |
T |
|
| Q |
318 |
ttcgtgctacctatattcaaaaccattactaccctatg |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50369734 |
ttcgtgctacctatattcaaaaccattactaccctatg |
50369697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 321
Target Start/End: Complemental strand, 50380033 - 50379897
Alignment:
| Q |
185 |
attattgtcggagccggcgtcatgggaagttccaccgcctaccaagcagccaaaaggggtctcaaaacactcttgcttgaacaatttgactttctccacc |
284 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| | || |||||| | || |||||||| || | || |||||||| || ||||| |||| |
|
|
| T |
50380033 |
attattgtcggcgccggcgtcatgggaagctccaccgcctactacgctgccaaacgaggcctcaaaaccctggttctcgaacaattcgattttcttcacc |
50379934 |
T |
|
| Q |
285 |
accgtggctcttcccacggtgaatcccgcacaattcg |
321 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| |
|
|
| T |
50379933 |
accgtggttcctcccacggtgaatcccgcacaattcg |
50379897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University