View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6372_low_6 (Length: 357)
Name: NF6372_low_6
Description: NF6372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6372_low_6 |
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| [»] scaffold0341 (4 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 47 - 334
Target Start/End: Original strand, 3939 - 4226
Alignment:
| Q |
47 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3939 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
4038 |
T |
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| Q |
147 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
246 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
4138 |
T |
|
| Q |
247 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4139 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
4226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 47 - 334
Target Start/End: Original strand, 11595 - 11882
Alignment:
| Q |
47 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11595 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
11694 |
T |
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| Q |
147 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
246 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11695 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
11794 |
T |
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| Q |
247 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11795 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
11882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3893 - 3922
Alignment:
| Q |
1 |
aaaagcaaccagttctaacggacaacatac |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3893 |
aaaagcaaccagttctaacggacaacatac |
3922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 11549 - 11578
Alignment:
| Q |
1 |
aaaagcaaccagttctaacggacaacatac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
11549 |
aaaagcaaccagttctaacggacaacatac |
11578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 47 - 334
Target Start/End: Original strand, 6509915 - 6510202
Alignment:
| Q |
47 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
146 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6509915 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
6510014 |
T |
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| Q |
147 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
246 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510015 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
6510114 |
T |
|
| Q |
247 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6510115 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
6510202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 6497114 - 6497216
Alignment:
| Q |
232 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
331 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
6497114 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattc |
6497213 |
T |
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| Q |
332 |
tct |
334 |
Q |
| |
|
||| |
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|
| T |
6497214 |
tct |
6497216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 6514468 - 6514566
Alignment:
| Q |
236 |
atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctct |
334 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
6514468 |
atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctct |
6514566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 6502468 - 6502529
Alignment:
| Q |
254 |
aaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttgg |
315 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||| |||| |
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|
| T |
6502468 |
aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttgg |
6502529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 6509869 - 6509898
Alignment:
| Q |
1 |
aaaagcaaccagttctaacggacaacatac |
30 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
6509869 |
aaaagcaaccagttctaacggacaacatac |
6509898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 6526011 - 6525946
Alignment:
| Q |
265 |
gagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacatt |
330 |
Q |
| |
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|||||| | ||||| |||||||||||| | ||||| ||||||||| |||||||||||||| |||| |
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| T |
6526011 |
gagagtgagagaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcatt |
6525946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 27367905 - 27367975
Alignment:
| Q |
245 |
gcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttgg |
315 |
Q |
| |
|
||||||| | |||| |||| ||||| || ||||| |||||||||||| ||| |||||||||||||| |||| |
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|
| T |
27367905 |
gcaggtttcgaaggtattgagagagcaagagaataactattaagcatgactgcaacagaagccatggttgg |
27367975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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