View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_high_10 (Length: 372)
Name: NF6373_high_10
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 11577007 - 11577342
Alignment:
| Q |
19 |
aaaaatataaaccaaaaagatagaataaggaaccacgagaacaacatcaaggtggggaataaccaccacaaacaaagggttacaccaccaagaactaaag |
118 |
Q |
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| T |
11577007 |
aaaaatataaacaaaaaagatagaataaggaaccacaagaacaacatcaaggtggggaataaccaccaaaaacaaagggttacaccatcaagaactaaag |
11577106 |
T |
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| Q |
119 |
tnnnnnnngaaagcaggtctttgcgccttaaactaccaccaagaatgcaacttaatcctatcaattaaatgctcaagagacaaattcttgttggaaaaaa |
218 |
Q |
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| T |
11577107 |
taaaaaaggaaagtaggtctttgcgccttcaaccaccaccaagaatgcagcttaatcctatcaatcaaatgctcaagagacaaattcttgttagaaaaaa |
11577206 |
T |
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| Q |
219 |
tcttttaatttcactcctttcaaatgacccaaatacaaatcaaccaaaccacttgcaaacaatgatgaatatccattcgaaagaaattatgtccaccaag |
318 |
Q |
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| T |
11577207 |
tctgttaatttcgctcctttcaaatgacctaaatacaaaccaaccaaaccacttgcaaacaatgatgaatatccattcgaaagaaattatgtccaccaag |
11577306 |
T |
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| Q |
319 |
ttgcatagcatgcgtgcatgtatcaattggtataac |
354 |
Q |
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| T |
11577307 |
ttgcatagcatgcgtgcatgtatcaattggtataac |
11577342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 38402263 - 38402203
Alignment:
| Q |
196 |
agacaaattcttgttggaaaaaatcttttaatttcactcctttcaaatgacccaaatacaa |
256 |
Q |
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| T |
38402263 |
agacatatttttgttggagaaaatccatgaatttcactcctttcaaatgacctagatacaa |
38402203 |
T |
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