View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6373_high_11 (Length: 372)

Name: NF6373_high_11
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6373_high_11
NF6373_high_11
[»] chr1 (3 HSPs)
chr1 (12-354)||(10489437-10489779)
chr1 (96-181)||(3619319-3619405)
chr1 (81-189)||(7393773-7393882)
[»] chr4 (2 HSPs)
chr4 (94-189)||(34782202-34782298)
chr4 (275-314)||(34485602-34485641)
[»] chr3 (2 HSPs)
chr3 (94-189)||(7817723-7817819)
chr3 (94-142)||(29168391-29168439)
[»] chr8 (2 HSPs)
chr8 (94-188)||(19730015-19730110)
chr8 (81-156)||(41352293-41352368)
[»] chr7 (1 HSPs)
chr7 (111-189)||(47098560-47098639)
[»] chr6 (1 HSPs)
chr6 (262-330)||(2371025-2371093)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 10489779 - 10489437
Alignment:
Q  12 atgaacacaatacgaatccaattttcatcactccttataatggctcaaatgaggccattataaggaacatatattgaatccgacaactttatcttacata 111  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10489779 atgaacacaatacgaatccaattttcaccactccttataatggctcaaatgaggccattataaggagcatatattgaatccgacaactttatcttacata 10489680  T
Q  112 ttagtattttattcatacttaattttattgcagcttaaaatattagttcaatatttttaattaatattaatatgaaaagtgctctacaatatactctaat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10489679 ttagtattttattcatacttaattttattgcagcttaaaatattagttcaatatttttaattaatattaatatgaaaagtgctctaaaatatactctaat 10489580  T
Q  212 gaatctgcttgaaattgtcaaagaactcgttttttaagatggcaaaaattgaaaattttgagtattaaaatgttgataattttgcatgaagttcaacaaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10489579 gaatctgcttgaaattgtcaaagaactcgttttttaagatggcaaaaattgaaaattttgagtattaaaatgttgataattttgcatgaagttcaacaaa 10489480  T
Q  312 gatagttgaaaattatattggttgagatccattcgacaaaaat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10489479 gatagttgaaaattatattggttgagatccattcgacaaaaat 10489437  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 181
Target Start/End: Complemental strand, 3619405 - 3619319
Alignment:
Q  96 aactttatcttacatattagtattttattcatacttaattttattgcagcttaaaatatt-agttcaatatttttaattaatattaa 181  Q
    |||||||  |||||||||  ||||||||||||| ||||||||||  ||  ||||||| || | |||||||| |||||||||||||||    
T  3619405 aactttactttacatatttatattttattcatatttaattttatcacaatttaaaatgttaatttcaatatctttaattaatattaa 3619319  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 7393882 - 7393773
Alignment:
Q  81 tatattgaatccgacaactttatcttacatattagtattttattcatacttaattttattgcagcttaaaatattagttcaa-tatttttaattaatatt 179  Q
    ||||||| |||| | || |||| || |||||||| | |||| |||||| |||||| || |||| ||||| |||||| ||  | | |||||||||||||||    
T  7393882 tatattggatcccataaatttacctcacatattaatgttttgttcatatttaattgtactgcaacttaatatattaattttagtgtttttaattaatatt 7393783  T
Q  180 aatatgaaaa 189  Q
    ||||||||||    
T  7393782 aatatgaaaa 7393773  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 34782202 - 34782298
Alignment:
Q  94 acaactttatcttacatattagtattttattcatacttaattttattgcagcttaaaatattagttcaa-tatttttaattaatattaatatgaaaa 189  Q
    ||||||||| || |||||| | | || |||||||| |||||||||||||| |||||||||||| || || |||||| |||||||||||||| |||||    
T  34782202 acaactttacctcacatatcaatgttatattcatatttaattttattgcaacttaaaatattaatttaattattttaaattaatattaatacgaaaa 34782298  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 314
Target Start/End: Original strand, 34485602 - 34485641
Alignment:
Q  275 attaaaatgttgataattttgcatgaagttcaacaaagat 314  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  34485602 attaagatgttgataattttgcatgaaattcaacaaagat 34485641  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 7817723 - 7817819
Alignment:
Q  94 acaactttatcttacatattagtattttattcatacttaattttattgcagct-taaaatattagttcaatatttttaattaatattaatatgaaaa 189  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||| ||  ||||||||| ||  |  |||||||||||||||||||| ||||    
T  7817723 acaattttatctcacatattaatattttattcatactttattttattgcaactaaaaaatattaattttagttttttaattaatattaatattaaaa 7817819  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 29168391 - 29168439
Alignment:
Q  94 acaactttatcttacatattagtattttattcatacttaattttattgc 142  Q
    ||||||||| |||||||||||||||||||||  || |||||||||||||    
T  29168391 acaactttaccttacatattagtattttatttttatttaattttattgc 29168439  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 19730015 - 19730110
Alignment:
Q  94 acaactttatcttacatattagtattttattcatacttaattttattgcagcttaaaatattagttcaa-tatttttaattaatattaatatgaaa 188  Q
    ||||||||| || | |||||| |||| |||||||  ||||||||||| || |||||||||||| || || |||||| ||||||||| |||||||||    
T  19730015 acaactttacctcatatattaatattatattcatgtttaattttattacaacttaaaatattattttaattattttaaattaatatcaatatgaaa 19730110  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 41352368 - 41352293
Alignment:
Q  81 tatattgaatccgacaactttatcttacatattagtattttattcatacttaattttattgcagcttaaaatatta 156  Q
    |||||||| ||| |||||||||||| |||||||| ||||  ||||||| ||||||||||| |  ||||||||||||    
T  41352368 tatattgagtcccacaactttatctcacatattaatattacattcatatttaattttattacgacttaaaatatta 41352293  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 47098639 - 47098560
Alignment:
Q  111 attagtattttattcatacttaattttattgcagcttaaaatattagttcaat-atttttaattaatattaatatgaaaa 189  Q
    |||| |||| |||||||| ||||||||||| ||  ||||||||||| || ||| ||||| ||||||||||||||||||||    
T  47098639 attaatattatattcatatttaattttattacaatttaaaatattaatttaattattttaaattaatattaatatgaaaa 47098560  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 2371025 - 2371093
Alignment:
Q  262 gaaaattttgagtattaaaatgttgataattttgcatgaagttcaacaaagatagttgaaaattatatt 330  Q
    |||||||||||| ||||  |||||||||||||||| | || | ||||| ||| |||| |||||||||||    
T  2371025 gaaaattttgagaattaggatgttgataattttgcttaaaatgcaacatagacagttaaaaattatatt 2371093  T

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