View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6373_high_14 (Length: 356)
Name: NF6373_high_14
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_14 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0119 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 352
Target Start/End: Complemental strand, 1884774 - 1884451
Alignment:
| Q |
29 |
tccaccgccgcctttaatccagctaccgctaccactactactactattactattaccgcaattgctcgtttcatcgaatgtgattgatgtttcactaacc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884774 |
tccaccgccgcctttaatccagctaccgctaccactactactactattactattaccgcaattgctcgtttcatcgaatgtgattgatgtttcactaacc |
1884675 |
T |
|
| Q |
129 |
aacccttgtagccatttagttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagt |
228 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884674 |
aactcttgtagccatttagttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagt |
1884575 |
T |
|
| Q |
229 |
gatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcattattattccatct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884574 |
gatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcattattattccatct |
1884475 |
T |
|
| Q |
329 |
tggacttgaaatttttgatgatgt |
352 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1884474 |
tggacttgaaatttttgatgatgt |
1884451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 151 - 315
Target Start/End: Original strand, 1266390 - 1266554
Alignment:
| Q |
151 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
250 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| |||||| ||| |||| || |
|
|
| T |
1266390 |
cataatgcatatttgcagcatcatttaattcaaatctcattccctttacattaatggcaataataactctgacaaagtgaccaatcctaagaattggcac |
1266489 |
T |
|
| Q |
251 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
315 |
Q |
| |
|
|||||||||| | ||||||| | |||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
1266490 |
atcttcaaacaatcaatcagaatgaactaactgattcctgcttgaacttttatctttcatatcat |
1266554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 317
Target Start/End: Complemental strand, 30729416 - 30729310
Alignment:
| Q |
211 |
taatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
310 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||| |||||| ||||||| |||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
30729416 |
taataactctaacaaagtgatcaatcctaagaatcggcgcattatcaaacattcaatcagtaggagctagcccattcctactgggacttgtatctttcat |
30729317 |
T |
|
| Q |
311 |
atcatta |
317 |
Q |
| |
|
||||||| |
|
|
| T |
30729316 |
atcatta |
30729310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1882122 - 1882158
Alignment:
| Q |
1 |
cacattcactttgcttcccatcctatcatccaccgcc |
37 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1882122 |
cacattcactttgcttcccatcccatcatccaccgcc |
1882158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 136 - 310
Target Start/End: Original strand, 37214575 - 37214749
Alignment:
| Q |
136 |
gtagccatttagttgcataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37214575 |
gtagccatttagttgcataatgcattattccagcaccaatcagttcaaatctcatgccttttaccttaatagcagtaatgactctaacaaagtgatcaat |
37214674 |
T |
|
| Q |
236 |
ccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
310 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||| |
|
|
| T |
37214675 |
cctaaggattgaaacatcttcaaaccaccaatcaggaggaactagctgattcctactcgggcttgagtctttcat |
37214749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 151 - 315
Target Start/End: Complemental strand, 20569 - 20405
Alignment:
| Q |
151 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
250 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||| ||||| ||||| ||| |||| ||||||||||||||| |||||| ||| |||| || |
|
|
| T |
20569 |
cataatgcatatttgcagcatcatttaattcaaatctcattccatttacattaatggcaataataactctaacaaagtgaccaatcctaagaattggcac |
20470 |
T |
|
| Q |
251 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
315 |
Q |
| |
|
|||||||||| | ||||||| | ||||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
20469 |
atcttcaaacaatcaatcagaatgaactagctgattcctgcttgaacttttatctttcatatcat |
20405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 151 - 315
Target Start/End: Complemental strand, 45312 - 45148
Alignment:
| Q |
151 |
cataatgcattattgcagcaccaattaactcaaatctcattccctttaccttaatagcagtaatgactctaacaaagtgatcaatccgaaggattgaaac |
250 |
Q |
| |
|
|||||||||| |||||||| || |||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| |||||| ||| |||| || |
|
|
| T |
45312 |
cataatgcatatttgcagcatcatttaattcaaatctcattccctttacattaatggcaataataactctgacaaagtgaccaatcctaagaattggcac |
45213 |
T |
|
| Q |
251 |
atcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcatatcat |
315 |
Q |
| |
|
|||||||||| | ||||||| | |||||| |||||||| |||| |||| ||||||||||||||| |
|
|
| T |
45212 |
atcttcaaacaatcaatcagaatgaactaactgattcctgcttgaacttttatctttcatatcat |
45148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 312
Target Start/End: Complemental strand, 16140559 - 16140458
Alignment:
| Q |
211 |
taatgactctaacaaagtgatcaatccgaaggattgaaacatcttcaaaccaccaatcaggaggaactagttgattcctacttggacttgtatctttcat |
310 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| || | ||||||||||| |||||||| |||| |||| |||||| || || |||||||||||||| |
|
|
| T |
16140559 |
taataactctaacaaagtgatcaatcccaagaatcaatgcatcttcaaacatccaatcagaaggagctagcccattcctgctaggtcttgtatctttcat |
16140460 |
T |
|
| Q |
311 |
at |
312 |
Q |
| |
|
|| |
|
|
| T |
16140459 |
at |
16140458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University