View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6373_high_15 (Length: 351)
Name: NF6373_high_15
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_15 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 7560870 - 7560526
Alignment:
| Q |
11 |
catcatcattgtaacccatgggcatgcatcattcaagaaagaacgaaacagagaaaatgcaaataaacatgtatataccattaccaaggcgggatgagca |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
7560870 |
catcatcattgtaacccatggacatgcatcattcaagaaagaacgaaacagagaaaatgcaaataaacttgtacataccattaccaaggcgggatgagca |
7560771 |
T |
|
| Q |
111 |
tgcagtggaatcgggaaggtaatctggtggttctggccggagaattggtttcggggttagttggatagggaagttgagaaccccttgcttggtaaacagt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
7560770 |
tgcagtggaatcgggaaggtaatctggtggttctggccggagaattggtttcggggttagttggatagggaagttgaaatccccttgcttggtaaacagc |
7560671 |
T |
|
| Q |
211 |
gaaaactccttcatctggtgccaataatgttggagtctgtgagactggtttagtacagacagtagattatccagagaattaagagcaaaaacaaaatatc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7560670 |
gaaaactccttcatctggtgccaataatgttggagtctgtgagactggtttagtacatacagtggattatccagagaattaagagcaaaaacaaaatatc |
7560571 |
T |
|
| Q |
311 |
ttgatatttaaaaa----gaaaaatcatattacttagaatcattt |
351 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7560570 |
ttgatatttaaaaaaaataaaaaatcatattacttagaatcattt |
7560526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University