View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_high_19 (Length: 311)
Name: NF6373_high_19
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 1323899 - 1324108
Alignment:
| Q |
7 |
tccttcacttcaagaaagagaaatatgagttagtcactaaactcaatttaattacttatatctttaatttcttgtagcttaagctttctcattcaatttt |
106 |
Q |
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| T |
1323899 |
tccttcacttcaagaaagagaaatatgagttagtcactaaactcaatttaattacttatatctttaatttcttgtagcttaagctttctcattcaatttt |
1323998 |
T |
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| Q |
107 |
attaatcttttccacagcacaaaaccagctttgtatggtgaacttgccaaaggccaagnnnnnnnggtatgcaaataattagtcgatgtagtgatcgata |
206 |
Q |
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| T |
1323999 |
attaattttttccacagcacaaaaccagctttgtatggtgaacttgccaaaggccaagcccccccggtatgcaaataattagtcgatgtagtgatcgata |
1324098 |
T |
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| Q |
207 |
tacatatata |
216 |
Q |
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| T |
1324099 |
tatatatata |
1324108 |
T |
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Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 1324176 - 1324261
Alignment:
| Q |
216 |
agagaccgaatcctcgaaattattgaccaaatataaatttatttctaaatcggaagcaacgataaactaaatttacatctcctttg |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1324176 |
agagaccgaatcctcgaaattattgaccaaatataaattcatttctaaatcggaagcaacgataaactaaatttacatctcctttg |
1324261 |
T |
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