View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_high_24 (Length: 288)
Name: NF6373_high_24
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 8530468 - 8530309
Alignment:
| Q |
48 |
gaagaagaagaagcagaccagggttttaatttggtaaccaatttttatttttatttnnnnnnnnngagtgagagagagatagactttatgcaattattga |
147 |
Q |
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| T |
8530468 |
gaagaagaagaagaagacaagggttttaatttggtaaccaatttttatttttatttaaaaaaagagagtgagagagagatagactttatgcaattattga |
8530369 |
T |
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| Q |
148 |
ggtaacccacgtcattcgttgatttcttagaaatcactctcgtgggattaagcatttctc |
207 |
Q |
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| T |
8530368 |
ggttacccaagtcattcgttgatttcttagaaatcactctcgtgggattaagcatttctc |
8530309 |
T |
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 8530500 - 8530465
Alignment:
| Q |
25 |
ccgggtatttgtgtcgatcatgggaagaagaagaag |
60 |
Q |
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| T |
8530500 |
ccgggtatttgtgtcgagcatgggaagaagaagaag |
8530465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 23983819 - 23983741
Alignment:
| Q |
208 |
aaaataaaatgatatagaatagaatcaaacatttcatcaaacaggtaataggggaaaagagaaatgaaccaacaatttatc |
288 |
Q |
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| T |
23983819 |
aaaataaaatgata--gaatagaatcaaacatttcatcaaacaggtaacaggggaaaacagaattgaaccaacaatttatc |
23983741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 5155791 - 5155832
Alignment:
| Q |
62 |
agaccagggttttaatttggtaaccaatttttatttttattt |
103 |
Q |
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| T |
5155791 |
agacgagggttttacgttggtaaccaatttttatttttattt |
5155832 |
T |
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