View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6373_high_3 (Length: 598)
Name: NF6373_high_3
Description: NF6373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6373_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 5 - 560
Target Start/End: Original strand, 9534505 - 9535056
Alignment:
| Q |
5 |
gagcagcacagagaatggatgatacttgaggactacatacaagttcttatacaaattcttggttcgagaaaccgcgatataaggaatcgtgctcttgtca |
104 |
Q |
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| T |
9534505 |
gagcaacacagggaatggatgatacttgaggactacatacaagttcttatacaaattcttggttcgagaaaccgcgatataaggaatcgtgctcttgtca |
9534604 |
T |
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| Q |
105 |
tcctttgcgttctagcaaaagataatgaagaagctaaggtacttaaatgaaaatactatccatccattttctattttaatactagtttacacattcgaga |
204 |
Q |
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| T |
9534605 |
tcctttgcgttctagcaaaagataatgaagaagctaaggtacttaaatgaaaatactatcc----attttctattttaatactagtttacacattcgaga |
9534700 |
T |
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| Q |
205 |
actaaactttcttttatacaggaaagaattgtaacagttgataatgctattgaatcgatcgtccattctcttggacgacgtcaggaggaaagaaagttag |
304 |
Q |
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| T |
9534701 |
actaaactttcttttatacaggaaagaattgtaacagttgataatgctattgaatcgatcgtccattctcttggacgacgtcaggaggaaaggaagttag |
9534800 |
T |
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| Q |
305 |
cagttgcattactgcttgaattatccaaatatgatttggcacgagaacacattggaaaagttcaaggttgcatacttctactggtgactatgtctaatgg |
404 |
Q |
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| T |
9534801 |
cagttgcattactgcttgaattatccaaatatgatttggcacgagaacacattggaaaagttcaaggttgcatacttctactggtgactatgtctaatgg |
9534900 |
T |
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| Q |
405 |
tgatgacaatcaagctgctagagatgcaactgaagtattggataatctttcatactctgatcagaatgttatactgatggcaaaggcaaactatttcaag |
504 |
Q |
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| T |
9534901 |
tgatgacaatcaagctgctagagatgcaactgaagtattggataatctttcatactctgatcagaatgttatactgatggcaaaggcaaactatttcaag |
9535000 |
T |
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| Q |
505 |
catttactgcaacgtctctccacaggtttgtttaatcttttatctacattagttga |
560 |
Q |
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| T |
9535001 |
catttactgcaacgtctctccacaggtttgtttaatcttttatctacattagttga |
9535056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 223 - 533
Target Start/End: Complemental strand, 48922908 - 48922598
Alignment:
| Q |
223 |
caggaaagaattgtaacagttgataatgctattgaatcgatcgtccattctcttggacgacgtcaggaggaaagaaagttagcagttgcattactgcttg |
322 |
Q |
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| T |
48922908 |
caggaaagaattgcaaatgttaaaaatgcaattgagtctattgtccgttctcttgggcgtcgtttgggggaaaggaagttggcggtggcattacttctgg |
48922809 |
T |
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| Q |
323 |
aattatccaaatatgatttggcacgagaacacattggaaaagttcaaggttgcatacttctactggtgactatgtctaatggtgatgacaatcaagctgc |
422 |
Q |
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| T |
48922808 |
aactatccgaatatgatttgttaagagaatacattggaaaagttcaaggttgcatactactattggtgactatgtctagcagtgaggataatcaagctgc |
48922709 |
T |
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| Q |
423 |
tagagatgcaactgaagtattggataatctttcatactctgatcagaatgttatactgatggcaaaggcaaactatttcaagcatttactgcaacgtctc |
522 |
Q |
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| T |
48922708 |
aagagatgcaacagagttactggagaaactttcatcctctgatcagaatgttatacagatggcaaaagcaaattatttcaagcatttattgcagcgcctc |
48922609 |
T |
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| Q |
523 |
tccacaggttt |
533 |
Q |
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||| ||||||| |
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| T |
48922608 |
tccgcaggttt |
48922598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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